PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G019400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 366aa MW: 38771.8 Da PI: 7.0634 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.3e-10 | 106 | 131 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ Brast03G019400.1.p 106 FKTKLCCKFRA-GTCPYVTNCNFAHGM 131 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.1 | 4.6e-06 | 179 | 204 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Brast03G019400.1.p 179 YKGRHCKKFYTEEGCPYGDACTFLHD 204 78888********************7 PP | |||||||
3 | zf-CCCH | 43.3 | 5.8e-14 | 244 | 269 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Brast03G019400.1.p 244 WKTRICNKWEMTGYCPFGSKCHFAHG 269 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 103 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 103 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 105 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-9 | 177 | 206 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-7 | 177 | 206 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-17 | 240 | 273 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-10 | 240 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 243 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 243 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-11 | 244 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDYTNAIHII PDAPGPEAWA NNSAAPPGGD SGIWATEDDY SQWNADPGIT GGGGYGGDRN 60 SSQPRSRDGS EQPPLGKKPR GGGPSGGGGG DAGSTSKSRA IGKMFFKTKL CCKFRAGTCP 120 YVTNCNFAHG MEELRKPPPN WQEIVAAHEE ATEQREEHQI PIMTSSSVAP SDSVSGRAYK 180 GRHCKKFYTE EGCPYGDACT FLHDEQSKAR ESVAISLSPS VGGGSYNSPT AAANGPTILK 240 PSNWKTRICN KWEMTGYCPF GSKCHFAHGA AELHNYGGGL VDIDGRDIAS TPDSKQAALS 300 AKAPAETAAA STAAPPHADV YHLGIQSQRS TLASQRSGQL PRPIQKWKGP DKISRIYGDW 360 IDETD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G019400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573458.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 0.0 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | I1I1E0 | 0.0 | I1I1E0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G16377.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-104 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G019400.1.p |