PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G359400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 445aa    MW: 48481 Da    PI: 7.7729
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G359400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17124173155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Brast02G359400.1.p 124 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 173
                         78*******************......55************************998 PP
2AP241.53.2e-13216266155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Brast02G359400.1.p 216 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 266
                         89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-16124182IPR016177DNA-binding domain
PfamPF008472.0E-9124173IPR001471AP2/ERF domain
CDDcd000182.31E-11124183No hitNo description
SMARTSM003801.0E-31125187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17125182IPR001471AP2/ERF domain
PROSITE profilePS5103217.622125181IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-17216275IPR016177DNA-binding domain
PfamPF008479.6E-9216266IPR001471AP2/ERF domain
CDDcd000185.29E-26216276No hitNo description
SMARTSM003802.3E-33217280IPR001471AP2/ERF domain
PROSITE profilePS5103216.252217274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-16217275IPR001471AP2/ERF domain
PRINTSPR003671.3E-6218229IPR001471AP2/ERF domain
PRINTSPR003671.3E-6256276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVLDLNVESP AGSGSSSSSV LNNSGDAASA GSFRFGLLGS PADDEDCSAP PAFSSSGFVT  60
RQLFPPPPPL PPSAPGMMTM MAAPPASWQP RRAEDLGAVG QHQQQLATPA VAKKTRRGPR  120
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGLEADINF  180
NLSDYEEDLK QMRNWTKEEF VHILRRQSTG FARGSSKYRG VTLHKCGRWE ARMGQLLGKK  240
YIYLGLFDSE VEAARAYDRA AIRFNGREAV TNFETSSYNG DALPDTETEA IVDADVLDLD  300
LRMSQPNAHD SKRDNIVAGL QLTFDSPESS SIMVSQPMSS SSQWPVHQHS TAVPPQQLQH  360
LHPSASPVFF PSLQERPMER RPPESGGPLQ PFPSWGWHQV PAGGSSRSPL LHAAASSGFS  420
TASGAAAQQL PPFADHRFYF PPSA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G359400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6970020.0AB697002.1 Triticum aestivum q mRNA for transcription factor WAP2D, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559243.10.0floral homeotic protein APETALA 2
SwissprotQ84TB51e-180AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0Q3JJS80.0A0A0Q3JJS8_BRADI; Uncharacterized protein
STRINGBRADI1G03880.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-89related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]