PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G356600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 302aa    MW: 32655.5 Da    PI: 10.8284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G356600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-1890138355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+++AeIrdp     +  +r +lg+f+taeeAa+a++aa+ ++ g
  Brast02G356600.1.p  90 YRGVRQRR-WGKFAAEIRDP-----HqrRRLWLGTFDTAEEAAAAYDAAKIRISG 138
                         9****998.**********7.....235**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-2889162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-2689156IPR001471AP2/ERF domain
PROSITE profilePS5103221.35189156IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-1889140IPR016177DNA-binding domain
CDDcd000184.33E-1690158No hitNo description
PfamPF008474.6E-1290138IPR001471AP2/ERF domain
PRINTSPR003672.7E-1090101IPR001471AP2/ERF domain
PRINTSPR003672.7E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGPNPSLEML AAAAEAAAAV APPRGRVVRI LVHDSDATDS SSSEDEAPPS SSPKRQHGEA  60
SGTGRRRKKR RVMEAGRRDA ANWTRPAATY RGVRQRRWGK FAAEIRDPHQ RRRLWLGTFD  120
TAEEAAAAYD AAKIRISGNR VSKIRVCGSS APTNFPPAPC SPPRKSYKPI MLPPPPKPAK  180
LSPLPLKPAE PAISPPPLPA LPFALPLKLR LKLSLHSQVK VEPDCFAGEV QEEGRSCAGK  240
VQEEVRSCAR KVKEEDGSHE VQAIKPMWAM INGKRKKRSG CGTRVRALHA TSVCVEEVGG  300
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1590156663ATERF1
3gcc_A2e-1590156663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RRRKKR
26470RRRKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G356600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568412e-41AK356841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040O03.
GenBankAK3631802e-41AK363180.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013E23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563827.11e-150dehydration-responsive element-binding protein 2D
TrEMBLI1GLP41e-149I1GLP4_BRADI; Uncharacterized protein
STRINGBRADI1G04110.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.14e-14cytokinin response factor 5