PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G351800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 366aa    MW: 38414.5 Da    PI: 6.4273
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G351800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1734.3e-23250312163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq NR +ArrsR+RK++e+eeL++kv eL+a N  Lk+e+++lkk ++ +++e+
  Brast02G351800.1.p 250 ERELKRERRKQANRDSARRSRLRKQQECEELAQKVTELTAINGVLKSEIDQLKKDCEDMEAEN 312
                         89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-16243309No hitNo description
PfamPF001704.0E-21250312IPR004827Basic-leucine zipper domain
SMARTSM003381.5E-19250314IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.553252315IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-10253308No hitNo description
CDDcd147022.18E-18255305No hitNo description
PROSITE patternPS000360257272IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAASSSSGDN GPPNGGNGNP PPPTHGDWAS SMQAYFVALP AAGHHPYAAW PPPPPTQQHG  60
LVAPPGQAYG VPVPFPMYHH PAYYAHAPVA AGAPYMVGEA ASSVTAEWTR KRKTTCVPSG  120
DDASDDDGSQ GSSAKTAPGT EPDQKGSSSA KRRKSPSAAN AEGEPSQAAT TTMHNAVTAG  180
TLMDKGRSAS KLLVSAPGRV AVALANATPN LNIGMGTSNT SSSLVILSGQ GEVNAGASSQ  240
SNGSLSQMDE RELKRERRKQ ANRDSARRSR LRKQQECEEL AQKVTELTAI NGVLKSEIDQ  300
LKKDCEDMEA ENTQLMDEIL THDDEMLESE DPSVLTTLSI QVDLLMARRG RNSKLKSAND  360
VSKGY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113TRKRKT
2266272RRSRLRK
3266273RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G351800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312498.10.0DNA-binding protein EMBP-1
SwissprotP250327e-91EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2K2DI470.0A0A2K2DI47_BRADI; Uncharacterized protein
STRINGBRADI1G04510.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.18e-25basic region/leucine zipper transcription factor 16