PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G341400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 282aa    MW: 30217 Da    PI: 6.0414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G341400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08131175554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Brast02G341400.1.p 131 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 175
                         99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.69E-10124180No hitNo description
SuperFamilySSF474595.76E-15124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14128186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-6131175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGQPPQASE DDFLDQFFSL TNSLSAGGRP SGDQPFSLAL SLDAAADASG SRDRLGDADD  60
VGKSERDTVQ LSGLFPPVFG GGGQPPHLRP SPPAQMFHAQ QSKQGGPAVG PQPPAPRPKV  120
RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAAMLDEILD YVKFLRLQVK  180
VLSMSRLGGA GAVAQLVADI PLSVKGEASD SGSNQQIWEK WSTDGTERQV AKLMDEDIGA  240
AMQFLQSKAL CMMPISLAMA IYDTQHSQDG QPVKPEPNSH S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G341400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228376.20.0transcription factor UNE12
SwissprotO227685e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0Q3RHI20.0A0A0Q3RHI2_BRADI; Uncharacterized protein
STRINGTraes_5BL_DB5410008.21e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]