PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G341000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 419aa MW: 43891.5 Da PI: 4.7518

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G341000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.6	1.1e-12	227	278	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ Brast02G341000.1.p 227 RLRRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKY 278 5679*************************************99988877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-18	223	287	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-10	224	278	No hit	No description
PROSITE profile	PS50217	11.438	225	279	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-9	227	278	No hit	No description
Pfam	PF00170	3.4E-10	227	277	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	5.6E-47	294	409	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MERVFSVEEI PDPFWASQPP ASRDSNASTG AGPAAPGEVG GGAMNRCPSE WYFQKFLEEA 60 VLDSPAGGNP SPRAVASGGG VVVGGVEAAE VKQQPAPAPA AAAAATSAVV DPVEFNAMLK 120 QKLEKDLAAV AMWRATGAMP PERFTASSSL PNANFSHIGT INPIGGNVVP VQNQLVGGTS 180 GEQGPHFVQS VDALVKQAAS SSSREQSDDD DMEEDEITGN ANPTDQRLRR RKQSNRESAR 240 RSRSRKAAHL NELEAQVSQL RVENSSLLRR LADVNQKYNG AAVDNRVLKA DVETLRAKVK 300 MAEDSVKRVT GMSALFPPGS DMSSLSMPFT GSPSDATSDA AVPDDLNNYF STNSDVGGSN 360 GYMPEMASSA QEDDDFINGA LAQGKMGRAE SLQRVASLEH LQKRMCGGPG PASSGSTS*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MERVFSVEEI PDPFWASQPP ASRDSNASTG AGPAAPGEVG GGAMNRCPSE WYFQKFLEEA  60
VLDSPAGGNP SPRAVASGGG VVVGGVEAAE VKQQPAPAPA AAAAATSAVV DPVEFNAMLK  120
QKLEKDLAAV AMWRATGAMP PERFTASSSL PNANFSHIGT INPIGGNVVP VQNQLVGGTS  180
GEQGPHFVQS VDALVKQAAS SSSREQSDDD DMEEDEITGN ANPTDQRLRR RKQSNRESAR  240
RSRSRKAAHL NELEAQVSQL RVENSSLLRR LADVNQKYNG AAVDNRVLKA DVETLRAKVK  300
MAEDSVKRVT GMSALFPPGS DMSSLSMPFT GSPSDATSDA AVPDDLNNYF STNSDVGGSN  360
GYMPEMASSA QEDDDFINGA LAQGKMGRAE SLQRVASLEH LQKRMCGGPG PASSGSTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G341000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003557420.1	0.0	bZIP transcription factor RISBZ2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	I1GM78	0.0	I1GM78_BRADI; Uncharacterized protein
STRING	BRADI1G05480.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	2e-36	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast02G341000.1.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]