PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G318200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 388aa MW: 40228.3 Da PI: 9.6061

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G318200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.5e-38	86	143	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Brast02G318200.1.p 86 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 143 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.9E-32	88	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	89	143	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	89	140	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	91	127	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MIQELLGGTP MDQQQQHHHH HHQHIKSATN AVTHHHVSLP MVLQPISANP SPTSSSTSSR 60 SSTQRSPSAT SSPQGQAGQG QQGPEQAPLR CPRCNSSNTK FCYYNNYNLT QPRHFCKTCR 120 RYWTKGGALR NVPIGGGCRK PRPMPAPVAK QSAVAPASSC KSALSGMAPP PLGLGVGGPA 180 MPSWAPQQLM ALLNSTRAMQ GLHHGGSNNS NVHRLLGLDT MGQLQVLPGH SPSAAAMWPP 240 AAHRAMPPPP PMHLDMAGPL GLGLGGHSDL FSNLGLKPPT SSSPLAPAAS YYSDQLNAVV 300 SNGGGAGRPS AYESPSSYSC ATTMASLPAA SSTAASSGLT VGMDQQQPPV STSSSSLAAQ 360 EMQYWSSGPA AMSMAWPDLP ALNGAFP*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MIQELLGGTP MDQQQQHHHH HHQHIKSATN AVTHHHVSLP MVLQPISANP SPTSSSTSSR  60
SSTQRSPSAT SSPQGQAGQG QQGPEQAPLR CPRCNSSNTK FCYYNNYNLT QPRHFCKTCR  120
RYWTKGGALR NVPIGGGCRK PRPMPAPVAK QSAVAPASSC KSALSGMAPP PLGLGVGGPA  180
MPSWAPQQLM ALLNSTRAMQ GLHHGGSNNS NVHRLLGLDT MGQLQVLPGH SPSAAAMWPP  240
AAHRAMPPPP PMHLDMAGPL GLGLGGHSDL FSNLGLKPPT SSSPLAPAAS YYSDQLNAVV  300
SNGGGAGRPS AYESPSSYSC ATTMASLPAA SSTAASSGLT VGMDQQQPPV STSSSSLAAQ  360
EMQYWSSGPA AMSMAWPDLP ALNGAFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G318200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084363	1e-116	AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559395.1	0.0	dof zinc finger protein DOF3.2
TrEMBL	I1GMY8	0.0	I1GMY8_BRADI; Uncharacterized protein
STRING	BRADI1G07600.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Brast02G318200.1.p