PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G315300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 302aa    MW: 31328 Da    PI: 7.9184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G315300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07167212454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         a+n+r r RR+++ ++++ L++l+ +      +K + a++L +A  YI+ L
  Brast02G315300.1.p 167 AANKRPRVRREKLGERIQALQQLVSPF-----GKSDTASVLHEALGYIRFL 212
                         89************************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.135163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-13166225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-5167212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-9167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-6169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-6169217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVKEEGVVAD AGGGGRGYLD MLCLGEDAAA MDDYFHYPSP SSSSYQYQHS SAAISAAPSS  60
AVASPGCASY LQPPPPLPTP PYHNILSFGG DAFGFPYYGG AGQAIPVAVP QKSSPTAECT  120
SSISSMSSSP TATAASAISI SKPQEQAPKK KGSRSSDQRK AAAPAAAANK RPRVRREKLG  180
ERIQALQQLV SPFGKSDTAS VLHEALGYIR FLHDQVQVLS SPYMQRLPPS ARGPASKVEQ  240
RAGSSDLRSR GLCLVPVACT EHVTGGVAGV WSSSGLASST AQEGQQEDEM LRGDHHPGQL  300
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G315300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751268e-96AK375126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229558.11e-119transcription factor bHLH113
TrEMBLI1GN251e-118I1GN25_BRADI; Uncharacterized protein
STRINGBRADI1G07936.11e-119(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-30bHLH family protein