PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G301200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 316aa MW: 35184.4 Da PI: 10.4443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G301200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.8e-08	146	190	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ ++ + +K +i++ A YI++L Brast02G301200.1.p 146 HMMRERQRREKLSQSYADLYAMVSSR-----SRADKNSIVQSAAMYIHEL 190 889********************8.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.05E-12	141	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.788	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-10	145	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.40E-6	145	191	No hit	No description
Pfam	PF00010	3.1E-5	146	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-5	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MKEKHLTKHT GATSITSRQR RSRARTRPRE MQMDSYYAFQ QDESPFFPAA GAQPASPELP 60 FADLMASLLE EPPVVAAKPT AFQKYRDAGA SGGGGGGSSR GRGNIHRRVM DTLGRMGSGG 120 DQVRQEERRQ QQQPAGAVES SRGFRHMMRE RQRREKLSQS YADLYAMVSS RSRADKNSIV 180 QSAAMYIHEL KGAKDQLERK NEELKAKILG HDTQQPCVKV QFEVDEPSSS IDSMIGALRR 240 LKSMNVKTRG IRSTLSGHRL TTEMNVETTV AASEVERAVE EALREVERNQ PDSDTTFPGS 300 RRGSWSQTSH VQNVF*

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G301200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014752663.1	1e-178	transcription factor BHLH148
Swissprot	Q75KV9	1e-118	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A0Q3N9B8	1e-176	A0A0Q3N9B8_BRADI; Uncharacterized protein
STRING	BRADI1G09177.1	1e-174	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-17	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast02G301200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]