PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G296200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 170aa MW: 18994.7 Da PI: 10.0356 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.4e-09 | 55 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f +G C y drC+FaHg Brast02G296200.1.p 55 YKTKLCEKFETNGRCIYLDRCTFAHG 80 9************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-16 | 49 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-9 | 53 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.244 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-7 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MDRENHPSKT TPEHVMGQTG DRSMRPPPPP QPSERIGLAG SPKWSNQPPL TKIFYKTKLC 60 EKFETNGRCI YLDRCTFAHG VAELRRPSFA QGPTIRNPGE MKMVEAQKSG IPPAQASSGR 120 AFPSMPTPTM LNYPRQIPEE KEGVAKISNL ERLSRKKTNG IYGDWPEQY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G296200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230380.1 | 8e-72 | mRNA decay factor CTH1 | ||||
TrEMBL | A0A0Q3JMU4 | 5e-62 | A0A0Q3JMU4_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 8e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G296200.1.p |