PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G292100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 326aa    MW: 35895.2 Da    PI: 5.6593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G292100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10156204355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Brast02G292100.2.p 156 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 204
                         58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.20E-11151208No hitNo description
SuperFamilySSF474599.95E-17151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16153219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8156204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MYSGQQSDQG PSVNSGAEFL DGNWNSVAMH PKMGYNSGPY GFQAYSMELE ERPGPYRSSS  60
GTFSQNIQLS VERSSVVKKR KGVDDCTPLL NPSASSRMQN LGDQQTEVSS QTERDSLEEE  120
NKKISPKTQS KEDSSDGDAT KEDYVHIRAK RGQATNSHSL AERLRRKKIS ERMKLLQDLV  180
PGCSKITGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPE LGFDIEQILS KQMMISQGRH  240
LAFCGADPGS STLIAHFNQG IMQPDMMCNA SNPAGVLHGT FHEISAMNQM PEMWEALQNI  300
PDMNFNPAVA ADSSTNNAGT MKIEQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G292100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753140.10.0transcription factor bHLH74 isoform X2
SwissprotQ6NKN96e-52BH074_ARATH; Transcription factor bHLH74
TrEMBLI1GNR40.0I1GNR4_BRADI; Uncharacterized protein
STRINGBRADI1G09960.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]