PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G272100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 754aa    MW: 80701.7 Da    PI: 6.6481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G272100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07310330526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Brast02G272100.1.p 310 PCPDFRK-GVCRRGDMCEYAHG 330
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-1389168IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02590120IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.7E-1590178IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.50490160IPR020683Ankyrin repeat-containing domain
PfamPF136371.9E-992148No hitNo description
SMARTSM0024818125157IPR002110Ankyrin repeat
PROSITE profilePS5008810.633125160IPR002110Ankyrin repeat
SMARTSM003561.1E-5305331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4309332IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4310330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375310332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822340364IPR000571Zinc finger, CCCH-type
SMARTSM0035666340363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MNGTPISAST APSVDGGGGE DSTPKKNAAA AAAVAEMAKH LTVDTEDAFA GLLELAAEDD  60
ADGLRRALER APPAAADEAG LWYGRHKFME QRTPLMVAAT YGSLDALRLL LSLPSVDVNR  120
RCGHDDTTAL HCAASGGSPS AVEAVRLLIV AGADAGAKDA SGCRPSDVIS VPPKMIDAKI  180
ALQDLLGFPK AEHGVLRVVT RATNLISSPV SSPTAEDARS PSAAAMMMMM TKFADLPRVA  240
TSEKKEYPVD PSLPDIKNSI YASDEFRMYS FKIRPCSRAY SHDWTECPFV HPGENARRRD  300
PRKYHYSCVP CPDFRKGVCR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT GCNRRVCFFA  360
HTTDELRPLY ASTGSAVPSP RASATTAMEM AAAMGLMPGS PSSVSAVMSP FTPPMSPSSN  420
GMPPSLGWQQ PNVPTLHLPG SSLQSSRLRS SLSARDMPAD DYSLLQDADS QLINDLCYSR  480
LGSSTGNHTS RTKSLNPSNL DDLFSAEMVS SPRYSNADQG AMFSPSQKAA ILNQFQQQQQ  540
ALLSPINTGV FSTKAVDNQQ LPLHSSLLQA SLGMSSPGRM SPRCVESGSP MNSHLAAALA  600
QREQQQQQQQ TMRSLSSRDF GPSAARVSAL VGSPLSSSWS RWGSPSGTPD WGVNGEELGK  660
LRRSSSFELR SGCDDDPDLS WVHTLVKESP PEKQITAAES MNSVRPSPLI HPSVSNGEGS  720
GLNTRLDGRQ QAAVIEALLE QMQLDEKVGN QAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G272100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559545.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLI1GPB80.0I1GPB8_BRADI; Uncharacterized protein
STRINGBRADI1G11760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]