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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G236200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 33798.4 Da PI: 7.2499 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178 | 2.5e-55 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv++ +++ ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke Brast02G236200.1.p 5 LPPGFRFHPTDEELITYYLSRKVSDFAFTT-RAIADVDLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATESGYWKTTGKDKE 94 79*************************999.89***************999999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+l g+kktLvfy grapkgekt+Wvmheyr+ Brast02G236200.1.p 95 IFH-CGRLAGMKKTLVFYGGRAPKGEKTSWVMHEYRI 130 ***.99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-63 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.351 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEEGLPPGFR FHPTDEELIT YYLSRKVSDF AFTTRAIADV DLNKCEPWDL PSKASMGEKE 60 WYFFSMRDRK YPTGIRTNRA TESGYWKTTG KDKEIFHCGR LAGMKKTLVF YGGRAPKGEK 120 TSWVMHEYRI QNKFPYKPNK EEWVVCRVFK KSQIVKMRHP QDSPEMDSPC HDTNVSLGEL 180 GELDVSSILG SFAPGAAAAH ASGDNFGHRV DMGAYMGWLA AAAANQGAAA MLPWAAPGLL 240 GTVFAANPGL QKALPFAGCS QPRDVVVGAG DALFGSVMPK ADMECEQQQH HSQLEINEST 300 WRTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-56 | 5 | 151 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-56 | 5 | 151 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G236200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562269.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | I1GQ88 | 0.0 | I1GQ88_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14467.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 5e-93 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G236200.1.p |