PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G234400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 268aa MW: 28183.9 Da PI: 9.621

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G234400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.4	1e-35	65	118	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ Brast02G234400.1.p 65 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKR 118 579*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-31	66	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.391	66	120	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-22	67	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MPGQVMEAPL HQLPQLTSHP NYCKQDATAA TMADMARFLQ QQQHQLLQQP TNPNPNQNTN 60 TGAAREQCPR CASHDTKFCY YNNYNTSQPR HFCRACRRYW TLGGSLRNVP IGGSTRKRLR 120 PAPQPLRRFA APPPPIIPQQ QPAQAQPQQG GLLGSLFALG GAPLLLEGRV GFDLGLGLTG 180 GGAGEVVGLH SLGLRGGGNS AGTTSSLSAP LLWPGSLFEI NNGGNVDTWK VVSGGGAGAM 240 WAPTEFSSAA TVVPQVGGAF HGGAQML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G234400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374830	1e-85	AK374830.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559674.2	1e-110	dof zinc finger protein DOF1.7
TrEMBL	A0A0Q3NBG0	1e-109	A0A0Q3NBG0_BRADI; Uncharacterized protein
STRING	Traes_4BS_4B1025766.1	3e-92	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-26	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Brast02G234400.1.p