PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G192700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 456aa    MW: 51011.5 Da    PI: 6.8563
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G192700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.76e-33201651127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 
                         lppGf+F Pt++el+ +yL++k++g +  l  +i+  +++++ P+++  k  +++e+ wyfF+kr +ky+tg+r+nr+t  +g+Wkatg +
  Brast02G192700.1.p  20 LPPGFHFAPTEDELIIHYLRRKIAGLPPLLPIFIDVDNLNSYRPKQIVdKYREHGEDCWYFFTKRVRKYSTGNRPNRTTPgKGFWKATGAQ 110
                         79*************************7776679999**********834444566699******************77659********* PP

                 NAM  90 kevlskkgelvglkktLvfy..................kgrapkgektdWvmheyr 127
                         + +++ ++elvg  +tLvfy                  +   pk  kt+W+m ey+
  Brast02G192700.1.p 111 RLIHA-NKELVGRVRTLVFYtepekeeqvtpglkemndQTALPKLAKTNWIMYEYE 165
                         ***99.999***********88887777777766655446778888*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4015190IPR003441NAC domain
PROSITE profilePS5100540.42820192IPR003441NAC domain
PfamPF023654.0E-2021165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEVVPASASS GHRGRFVLNL PPGFHFAPTE DELIIHYLRR KIAGLPPLLP IFIDVDNLNS  60
YRPKQIVDKY REHGEDCWYF FTKRVRKYST GNRPNRTTPG KGFWKATGAQ RLIHANKELV  120
GRVRTLVFYT EPEKEEQVTP GLKEMNDQTA LPKLAKTNWI MYEYENLTSQ EEAEDKNIDK  180
IDEWVLCTIH ESWRCNGEEK VKDDDRAGGK KIKGKREINV GVKKRKREEK IEAEKGIDQS  240
QQQTDDLMKI LEVPISLPHL DTAAPEEEDG SGIEFKDSSP PQKRLPVARL QPQGPPQTKT  300
ISPFIADICY SICPNMAQWP QEPPRSETMF PPVGGTYTAD SAGSTMTSIM TWQGQQLSQV  360
SSFAGDTYIF DPRLEPGMAY PRAGYNYNVA PPNMATYQFT SLHPDAAAPP RAYGGSVPHT  420
VVGASDGLLS GSYAAGTKTT AIYMNSGTTS SQLRHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-291819115164NO APICAL MERISTEM PROTEIN
1ut4_B1e-291819115164NO APICAL MERISTEM PROTEIN
1ut7_A1e-291819115164NO APICAL MERISTEM PROTEIN
1ut7_B1e-291819115164NO APICAL MERISTEM PROTEIN
4dul_A1e-291819115164NAC domain-containing protein 19
4dul_B1e-291819115164NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G192700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230150.11e-130NAC domain containing protein 50
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-33NAC family protein