PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G191400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 293aa    MW: 33289.4 Da    PI: 5.7679
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G191400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35301222103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+
  Brast02G191400.1.p  30 FLTKTYQLVDDPCTDHVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKH 111
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+ks+
  Brast02G191400.1.p 112 LLSEIHRRKSS 122
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3720113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-5726119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.52E-3327119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAFLVERCSG EMVVSSSMEH MAAKPVPAPF LTKTYQLVDD PCTDHVVSWG EDEATFVVWR  60
PPEFARDLLP NYFKHNNFSS FVRQLNTYGF RKIVADRWEF ANEFFRKGAK HLLSEIHRRK  120
SSCSSSQPPP LPPPHQQQPY LSLFSPPHPQ LDQGAAAYHR FQEQQEEYYS ADSGDLLATL  180
SEDNRQLRRR NSLLLSELAR MRKLYNDIIY FLQNHVEPAP QPQPQPAGCY TRLVELDHAG  240
EPLVAPQRGG DDDDAAVKLF GVRLDEGIKK RRVLLVEESD HGDDQLGLGD EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-222612417125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G191400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639521e-109AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993541e-109AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAY3444941e-109AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561606.11e-144heat stress transcription factor B-4d
SwissprotQ10KX81e-109HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0Q3LF321e-143A0A0Q3LF32_BRADI; Uncharacterized protein
STRINGBRADI1G61620.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-69heat shock transcription factor B4