PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G124500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 26908.7 Da PI: 4.9564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.6e-18 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g Brast02G124500.1.p 52 QYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 101 69****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-29 | 51 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-19 | 52 | 110 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-34 | 52 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.60E-18 | 52 | 109 | No hit | No description |
PROSITE profile | PS51032 | 21.773 | 52 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-11 | 52 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MQDLIKCQAG GARGTMVKNY RCEYDGAAAA ALCGGGSRLQ QQPAAAVVSS RQYKGVRMRS 60 WGSWVSEIRA PHQKRRIWLG SYATPEAAAR AYDAALLCLK GSHAVLNFPS SSSSSSKYSV 120 ADDMSPRSIQ RAAAAAAAAF EATRVVVAED SCSSSSADVV TTASAESTLM GSAGDVRQEG 180 HQATTPTSSS AAASENGSPD QGDEGDRLWK ELVDGFASSP KLMDLIAAGQ GTPFSSSGWE 240 EPEEDDGEMM RLWSFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 52 | 116 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G124500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356733 | 1e-78 | AK356733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1039C08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228833.1 | 1e-95 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 2e-36 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | I1H775 | 2e-94 | I1H775_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G67350.1 | 4e-95 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 8e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G124500.1.p |
Publications ? help Back to Top | |||
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