PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G119400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 684aa MW: 75882.3 Da PI: 6.7866

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G119400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.6	1.8e-27	45	135	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++++r+ tr+gCka++++kk gkw vtk++++HnH Brast02G119400.1.p 45 DFYSIYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHESRNGEgshADQKQQERTGTRVGCKAMIMIKKIGPGKWIVTKFVKNHNHG 135 6****************************************999888899999*********************************7 PP
2	FAR1	87.8	1.5e-27	182	275	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH Brast02G119400.1.p 182 SFYINYASLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRPKKemtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNH 272 59**************************************999998988889999******************************** PP FAR1 88 ela 90 l Brast02G119400.1.p 273 LLL 275 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	45	136	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-25	182	275	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MPRAFNDMET SSHNPEAEKL IGHEDDTEFT PCEGMEFESE DAARDFYSIY ARNAGFRIRI 60 SRYTRSRRDN SIISRRIVCS KEGFHESRNG EGSHADQKQQ ERTGTRVGCK AMIMIKKIGP 120 GKWIVTKFVK NHNHGAVPPR KPAVRSADQD PSPMEKPNSI DVDPIEEPAE GMEFDTEEAA 180 KSFYINYASL NGFRARISRY CRSRRDNSII SRQIVCSKEG FREVRPKKEM TDEGKTKRPR 240 MITRVGCKAM IVVKKMNSGK WMVSKFEKEH NHLLLSSKPI HSTSNITSGE VGEFAAKSSD 300 PTEVKFEEYN AGVQCNSTDS LTVLYNNLCQ EAMKFAKEGS VTEEIYHVAV SALKEATEKV 360 AHVKRCHPIM PKRVVSVSEN KHKVLHMNTM NASQCSDEVK QKITHSQLKF CQEPTSNQVL 420 IPTNLVTDSG LSNSDDDSLF SHAFPKNEVR SRDGSECSYL HSENKNDDSS KKYQNSSSNQ 480 ATQGKHENIH GPSEETMVAI PAIPLTLYMP VMRNSPGASA DGLYKLLAAP IEAVPISYRP 540 AEPIRQPERN FCNLGPLPGV LSALNRRGNG PNPLVHATAL ACGARVVPLE EAASLIKVIE 600 SKIRSGEATI ARLPSSSLMP PVPEAVSMSS SSEGDEENDQ SEPLMVNAEV NCHNDQSSEE 660 MKLQGEQSEL ETESENCSAQ PEK*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MPRAFNDMET SSHNPEAEKL IGHEDDTEFT PCEGMEFESE DAARDFYSIY ARNAGFRIRI  60
SRYTRSRRDN SIISRRIVCS KEGFHESRNG EGSHADQKQQ ERTGTRVGCK AMIMIKKIGP  120
GKWIVTKFVK NHNHGAVPPR KPAVRSADQD PSPMEKPNSI DVDPIEEPAE GMEFDTEEAA  180
KSFYINYASL NGFRARISRY CRSRRDNSII SRQIVCSKEG FREVRPKKEM TDEGKTKRPR  240
MITRVGCKAM IVVKKMNSGK WMVSKFEKEH NHLLLSSKPI HSTSNITSGE VGEFAAKSSD  300
PTEVKFEEYN AGVQCNSTDS LTVLYNNLCQ EAMKFAKEGS VTEEIYHVAV SALKEATEKV  360
AHVKRCHPIM PKRVVSVSEN KHKVLHMNTM NASQCSDEVK QKITHSQLKF CQEPTSNQVL  420
IPTNLVTDSG LSNSDDDSLF SHAFPKNEVR SRDGSECSYL HSENKNDDSS KKYQNSSSNQ  480
ATQGKHENIH GPSEETMVAI PAIPLTLYMP VMRNSPGASA DGLYKLLAAP IEAVPISYRP  540
AEPIRQPERN FCNLGPLPGV LSALNRRGNG PNPLVHATAL ACGARVVPLE EAASLIKVIE  600
SKIRSGEATI ARLPSSSLMP PVPEAVSMSS SSEGDEENDQ SEPLMVNAEV NCHNDQSSEE  660
MKLQGEQSEL ETESENCSAQ PEK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G119400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014752890.1	0.0	uncharacterized protein LOC100841807
TrEMBL	I1H7B9	0.0	I1H7B9_BRADI; Uncharacterized protein
STRING	BRADI1G67740.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-29	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Brast02G119400.1.p