PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G112700.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 383aa    MW: 40740.1 Da    PI: 9.7793
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G112700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.42.1e-20298360163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+e+kr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++++l+se+
  Brast02G112700.4.p 298 EREVKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKRLQEKCDSLTSEN 360
                         799**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.8E-281101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-19140266No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-14294356No hitNo description
SMARTSM003381.6E-19298362IPR004827Basic-leucine zipper domain
PfamPF001706.6E-18298360IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.553300363IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-9301357No hitNo description
CDDcd147024.30E-22303354No hitNo description
PROSITE patternPS000360305320IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGKGDGTTKS KSQKSSATQN EQSTPTNPPT AYPDWSQFQA YYNVPGTAPM TPPAFYHSAV  60
APSPQGHPYM WGPQMMPPYG TPPPYATMYA QGTPYQQAPM PPGSHPYSPY PVQASNGTVH  120
TPPSGAGGSE TDKSSKNKRK TPLKRSKGSL GSLDVVTVKN KTSPAKPLAS SSNEGSSQSE  180
SGSGSYSEGS STNSKSGSRT KDEHGQDASN KGATASSAVE PTQVSSGPVV LNPMMPYWPV  240
PPPMAGPAGP ATGVNMGMDY WGAPTSVPMH GKVAAAPTSA PSSNSRDIVL SDPAIKDERE  300
VKRQKRKQSN RESARRSRLR KQAEWEEVAN RADLLKQENS SLKEELKRLQ EKCDSLTSEN  360
TSLHEKLKEL DGEKSNGNSC KQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320RRSRLRK
2314321RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G112700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1AC0.0D12920.2 Triticum aestivum mRNA for transcription factor HBP-1a(c14), complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228895.10.0bZIP transcription factor 16
RefseqXP_010228896.10.0bZIP transcription factor 16
RefseqXP_010228897.10.0bZIP transcription factor 16
RefseqXP_010228898.10.0bZIP transcription factor 16
RefseqXP_014753065.10.0bZIP transcription factor 16
SwissprotQ501B24e-87BZP16_ARATH; bZIP transcription factor 16
TrEMBLI1H7L40.0I1H7L4_BRADI; Uncharacterized protein
STRINGBRADI1G68560.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-63basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]