PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G104400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 305aa    MW: 32801.5 Da    PI: 4.8195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G104400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11141188355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ + f  L +++P +     kK +K++ L  ++eY+k+L+
  Brast02G104400.2.p 141 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIEYVKQLE 188
                         5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14142202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-9143192No hitNo description
SMARTSM003536.8E-11144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEQPNQWLSQ PEEDELAYMY QQDGHVPGME QQFSEPPLPD QHREQYYTSP MATPSSFHPP  60
RSSNFQSFGA SSSLPNLSFG AMTAVKDEQG QPSSNFLSFG GQAMATTLNF SGGSSSWQQD  120
GMEAVQLQAP ERRSRAPGNA QEHVIAERKR REKLQQQFVS LATIVPGLKK TDKISLLGST  180
IEYVKQLEEK VKALEEQGTR IRPADSNTVF ESKCCISAGA DNDAAAGTSG GGASGDGGGE  240
YSSPAVEASI RGNTALLKIC CKERRGVLVM VLSELENQGL SIINTNVVPF TDSCLNITIT  300
AKAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151ERKRRE
2147152RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G104400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230206.10.0transcription factor bHLH18 isoform X2
TrEMBLA0A0Q3JZ530.0A0A0Q3JZ53_BRADI; Uncharacterized protein
STRINGBRADI1G69110.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-30bHLH family protein