PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G083800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 371aa    MW: 40331.5 Da    PI: 4.9085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G083800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.18.3e-121149341
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        i + ++r   ++ R++g++K A+ELS+LC++ vav++ +
  Brast02G083800.1.p 11 IGDRRKRAAALASRKKGLMKMASELSTLCNVPVAVVLGG 49
                        56789999***************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-5157IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-13173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.914147IPR002100Transcription factor, MADS-box
CDDcd002661.08E-16273No hitNo description
PfamPF003191.3E-101147IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRGKTPMGL IGDRRKRAAA LASRKKGLMK MASELSTLCN VPVAVVLGGP VWESEHGVFD  60
RYRALPAEKR AEHTHLRHLE GNLGKEHAKL ARVLLRGPAA LAQPADADLN GMGLDELREL  120
LESLDAALLA TAERKKALGL PEHDDYYAVD VGGAPCSTGG GGHYEYEMLE PDDGRRLDHQ  180
AAMWEDANAM NYMMQPGYYG IPNMNLTQPA CDARGYMLDM APVIPHPAYG YGGFQYTDGY  240
DAGMGSSQMQ VPSNVDDNLA MWHAAEPCNA VVPAGWHPDL FADNSLYTAP GCLGMGDCGD  300
AMNYLDCNDF QWSGTSTSQN SSNIDYLHYL RFPAILDVVD GRRNELMFAT PPPMVPEEIF  360
PADKQRGHGL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G083800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755040.11e-134uncharacterized protein LOC104583363
TrEMBLA0A0Q3HK220.0A0A0Q3HK22_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960