 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Brast02G073200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 313aa MW: 33687.1 Da PI: 4.7214 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast02G073200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.5 | 2.6e-19 | 57 | 108 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ eq+++Le+ Fe +++++ e+++++A+ lgL+ rqV vWFqNrRa++k
Brast02G073200.1.p 57 RRLALEQVRALERSFEVDNKLDPERKARIARDLGLQPRQVAVWFQNRRARWK 108
467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128 | 3.8e-41 | 55 | 146 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkrrl+ eqv++LE+sFe ++kL+perK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++
Brast02G073200.1.p 55 KKRRLALEQVRALERSFEVDNKLDPERKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFSALRARHDALRNDCDALRRDKDALAAEIR 145
9**************************************************************************************9998 PP
HD-ZIP_I/II 93 e 93
e
Brast02G073200.1.p 146 E 146
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MKRQSKRPTR GGQESPEPGE SLLAPYMEHD DAEFEEAEED EDEERGSLSC GLGGKKRRLA 60
LEQVRALERS FEVDNKLDPE RKARIARDLG LQPRQVAVWF QNRRARWKTK QLERDFSALR 120
ARHDALRNDC DALRRDKDAL AAEIRELREK LPKPETGAVK AEAGIEGELR QAPAVGNNNK 180
DGSSDSDSSV VFNDEASPCP YSGAAALEQP GGGGCFMGFG APAFLDSSAA TGGCSSSLLP 240
MLEAKWPAAY GSYDAGKGGG GYGFTEEWLA GTDAIGNDAG AGFFADEHVS SLNFGWCGSG 300
AEGFDLHGYC KK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 110 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353965 | 1e-122 | AK353965.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004B20. |
