PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G067300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 350aa    MW: 37021.5 Da    PI: 4.5229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G067300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17115164255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a++ a++ ++g
  Brast02G067300.1.p 115 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDGAALGIRG 164
                         69*******.**********75....44*******************99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.46E-20114174No hitNo description
SMARTSM003802.8E-37115178IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21115173IPR016177DNA-binding domain
PROSITE profilePS5103224.474115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-30115173IPR001471AP2/ERF domain
PfamPF008475.1E-11115164IPR001471AP2/ERF domain
PRINTSPR003673.7E-10116127IPR001471AP2/ERF domain
PRINTSPR003673.7E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAILAEL IPTAPARRVT AGHLWPGKGG KNQQQKRRTR GGVPAAAASA DDFEAAFREF  60
DEDSEEEEQQ QQQEHDEMVM EEEAEEVAES KPFAFNASKK ASSGGRRGGS RKPAQYRGVR  120
RRPWGKWAAE IRDPVKGVRV WLGTFPSAEA AALAYDGAAL GIRGPRAKLN FPPSSSAAAC  180
LGTRKRGRAA DHPAAKATPV IDLVHEEDAA PAAHEHRSSG MKHELAESSE SSGSALPDFS  240
WQGMSASDDA EARPALEAEA DQLGCGAAKR PRAEDADEAA SDGSGALFDG LYFAQDPFAF  300
FDGGAYESLD CLFSGDAVQQ SNAAAAADET VGLWSFDDDC LVDESSLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21112172263ATERF1
3gcc_A7e-21112172263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G067300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640868e-78AK364086.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021I23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313809.11e-139ethylene-responsive transcription factor ERF073-like
TrEMBLI1H8Y91e-138I1H8Y9_BRADI; Uncharacterized protein
STRINGBRADI1G72450.11e-139(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.32e-21ERF family protein