PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G060900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 319aa    MW: 34011 Da    PI: 6.6783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G060900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-202978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a+++l+g
  Brast02G060900.1.p 29 EYRGVRQRT-WGKWVAEIREP---NKRTRVWLGSFATAEEAALAYDEAARRLYG 78
                        69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-292888No hitNo description
PROSITE profilePS5103222.552986IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-212987IPR016177DNA-binding domain
SMARTSM003809.7E-372992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-302987IPR001471AP2/ERF domain
PfamPF008472.7E-142978IPR001471AP2/ERF domain
PRINTSPR003671.7E-103041IPR001471AP2/ERF domain
PRINTSPR003671.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEMSYGRKRS SWKKGPTRGK GGPQNAACEY RGVRQRTWGK WVAEIREPNK RTRVWLGSFA  60
TAEEAALAYD EAARRLYGPD AFLNLPHLRA ASGPAAQHQH RAHLVRWLPA SSSAARAAVP  120
AYGLLNLNAQ HNVHVIHQRL QEINNSKPAS SKIVTTPPAP LPDQLLPALP ASSPSSTVTA  180
STNAMPMPPA ADSSVSCFQA LELGRVTESA EVHGFGGDKP QLDLKEFLQQ IGVLRHDDND  240
GARTGKDNGE AATDGQFGLG GNGGEFDWDA LAADMSDITG GHGVVGGLDL GVGVNGAFNM  300
DDLEQFGCTY MPVPVWDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-173093669ATERF1
3gcc_A1e-173093669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G060900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752075.11e-162dehydration-responsive element-binding protein 2E
RefseqXP_024313262.11e-162dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-105DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0Q3HKY21e-161A0A0Q3HKY2_BRADI; Uncharacterized protein
STRINGBRADI1G72990.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-45ERF family protein