PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G056900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 433aa MW: 46950.4 Da PI: 8.2426

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G056900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	98	157	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ Brast02G056900.1.p 98 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKSKSI 157 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	94	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MGQCRAAAGG GDCLIKLFGK TIPVPDASGG VVDKDQQHSA SSTAEPKIQE NIPRDSTGTP 60 TQPEVVDTDD SSAVKNSSAD QEEEQSDTAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY 120 NINQPRHFCK KCQRYWTAGG AMRNVPVGAG RRKSKSISAA SHFLQRIRAT LPGDPLCTPI 180 KTNATVLSFG SDTSTLDLTE QMKHLKEKLI PITQIKNTDD PSVGSCAEGW PKGEEPNQMN 240 TRERVTEDKS TNVAQHPCMN GGTMWPFSCA PSPAYFTSNV AIPFYPAAAA AAAAYWGYMV 300 PGAWNTPWPP QSQSQSSSSP SAASPVSTMS SCFQSRKHPR DGDEERDTNR NGKVWVPKTI 360 RIDDADEVAR SSIWSLIGIN GDKDDGRGCK LTGVFNPKDE AKRATHRVNN SLPFLKGNPA 420 ALSRSVTFQE GS*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MGQCRAAAGG GDCLIKLFGK TIPVPDASGG VVDKDQQHSA SSTAEPKIQE NIPRDSTGTP  60
TQPEVVDTDD SSAVKNSSAD QEEEQSDTAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY  120
NINQPRHFCK KCQRYWTAGG AMRNVPVGAG RRKSKSISAA SHFLQRIRAT LPGDPLCTPI  180
KTNATVLSFG SDTSTLDLTE QMKHLKEKLI PITQIKNTDD PSVGSCAEGW PKGEEPNQMN  240
TRERVTEDKS TNVAQHPCMN GGTMWPFSCA PSPAYFTSNV AIPFYPAAAA AAAAYWGYMV  300
PGAWNTPWPP QSQSQSSSSP SAASPVSTMS SCFQSRKHPR DGDEERDTNR NGKVWVPKTI  360
RIDDADEVAR SSIWSLIGIN GDKDDGRGCK LTGVFNPKDE AKRATHRVNN SLPFLKGNPA  420
ALSRSVTFQE GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G056900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558722.1	0.0	cyclic dof factor 1
TrEMBL	I1H995	0.0	I1H995_BRADI; Uncharacterized protein
STRING	BRADI1G73710.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	5e-61	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Brast02G056900.1.p