PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G044900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 385aa    MW: 41404.9 Da    PI: 5.8625
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G044900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.54e-27127213371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Brast02G044900.1.p 127 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnmespdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 213
                         689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.2E-12512384IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.4E-45122218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-37125213IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.1E-25128213IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.22E-20128214IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.62E-40218321IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-39220335No hitNo description
SMARTSM011384.2E-79220382IPR014889Transcription factor DP, C-terminal
PfamPF087816.5E-39221355IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVSGIAHRPD EDGGRGASSF PRPPQPSSAR TPLGTPPPSS GAHSASTSGG SAGSPTSRSE  60
QHGPAATSTG PAPEAAAAAT ASTPASEGTF LRLNNLDING DDAPSSQAPV SKKKKRRASA  120
VGPDKGGRGL RQFSMKVCEK VESKGRTTYN EVADELVAEF ADPNNNMESP DPDNPNAQQY  180
DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSIN DIEELQTELV GLKGRIEKKS  240
AYLQELQDQY LGMQNLIHRN EGMYGSGNIP SGGVALPFIL IQTRPHATVE VEISEDMQLV  300
HFDFNTTPFE LHDDSYVLKA MNSCGKEQND GTSEPRLNGC EDSSMANIYW DQLQQSALAN  360
NGTARFPSSP PVPGILKGRV KHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-34124218693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116KKKKRR
2112116KKKRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G044900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558793.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-133DPB_ARATH; Transcription factor-like protein DPB
TrEMBLI1H9M50.0I1H9M5_BRADI; Uncharacterized protein
STRINGBRADI1G74890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP