PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G028600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 922aa MW: 102739 Da PI: 5.4434

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G028600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.8	4.4e-28	601	651	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Brast02G028600.1.p 601 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 651 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.87	590	671	IPR003035	RWP-RK domain
Pfam	PF02042	9.8E-26	603	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.53E-23	815	908	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-23	821	904	No hit	No description
PROSITE profile	PS51745	22.436	823	905	IPR000270	PB1 domain
SMART	SM00666	5.9E-25	823	905	IPR000270	PB1 domain
CDD	cd06407	4.27E-38	824	904	No hit	No description
Pfam	PF00564	5.2E-18	824	904	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MEQEQQHPQS HEDGLRGCGM MMGIRSDMAG REELDLMEEF LLASPGLDFS EFLHPGDGEF 60 DIGSSITTAA TPPPPPPASA GDDDDEADAE RPGRAWLFHP EAATVKERLR RALQGIASRS 120 QSQRGAAAGE LLVQVWVPTR IGDRQVLTTC GQPFWYDCRS DRLQSYRTVS VKYQFSADES 180 GCAELGLPGR VFVGRVPEWT PDVRYFTDQE YPRVRHAQHF DIRGSVAMPV FDRRRRSSRG 240 CLGVVELVMT TQKINYNAEI ENICNALQEV DLRSSDISSD PRAQVFDTSY RAVVPEILHV 300 LRAVCDTHKL PLAQTWIPCV CQAKRASRHS DEKYKYCVST VDEACYVRDP AVTGFHQACS 360 EHHLFRGEGV VGTALGTNEP CFSPDITTYS KVQYPLSHYA KLFSLRAAVA IRLRSVRTGS 420 LDFVLEFFLP RNCINSEDQG LMLNSLSNTI QQVCCTLRVV SVKELVDDGS PETNLPTPPE 480 FYAKSTENLD EICSGINVPA RTTSLEASEE VSSWIASLVD VQNKGAKGEI DCDLPFGLSK 540 QEDEGFSVTG WRTSPVLVPE DTFRSEFNQH EEYETKEVIC SSDPSLLNSD KAVEKRRTKM 600 EKTVSLQELR KHFAGSLKEA AKNLGVCPTT LKRICRQHGI NRWPSRKIKK VGHSLKKLQM 660 VIDSVHGAEG TVRLSSLYEN FTKTTWSERE LQEDVSCPAS EQKVRLEPSV PDRLCEGRFS 720 SHTSGSNSLS PTYSQSSNSS LGCSSDPKPQ QQHGSAPQLA IKQEISMEEN QSSTLMKAAS 780 HAELQVFTEE RPVTLSRSQS HMFFSEQKPV ENISSMQEDK PDPLKIKAMY GEERCIFRLQ 840 PSWGFEKLRE EIVKRFGISQ ETCDLKYLDD ESEWVLLTCD ADLLECIDVY KSASAKTVRI 900 SVNPTGQPVL GGSFGNSTAL S*

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MEQEQQHPQS HEDGLRGCGM MMGIRSDMAG REELDLMEEF LLASPGLDFS EFLHPGDGEF  60
DIGSSITTAA TPPPPPPASA GDDDDEADAE RPGRAWLFHP EAATVKERLR RALQGIASRS  120
QSQRGAAAGE LLVQVWVPTR IGDRQVLTTC GQPFWYDCRS DRLQSYRTVS VKYQFSADES  180
GCAELGLPGR VFVGRVPEWT PDVRYFTDQE YPRVRHAQHF DIRGSVAMPV FDRRRRSSRG  240
CLGVVELVMT TQKINYNAEI ENICNALQEV DLRSSDISSD PRAQVFDTSY RAVVPEILHV  300
LRAVCDTHKL PLAQTWIPCV CQAKRASRHS DEKYKYCVST VDEACYVRDP AVTGFHQACS  360
EHHLFRGEGV VGTALGTNEP CFSPDITTYS KVQYPLSHYA KLFSLRAAVA IRLRSVRTGS  420
LDFVLEFFLP RNCINSEDQG LMLNSLSNTI QQVCCTLRVV SVKELVDDGS PETNLPTPPE  480
FYAKSTENLD EICSGINVPA RTTSLEASEE VSSWIASLVD VQNKGAKGEI DCDLPFGLSK  540
QEDEGFSVTG WRTSPVLVPE DTFRSEFNQH EEYETKEVIC SSDPSLLNSD KAVEKRRTKM  600
EKTVSLQELR KHFAGSLKEA AKNLGVCPTT LKRICRQHGI NRWPSRKIKK VGHSLKKLQM  660
VIDSVHGAEG TVRLSSLYEN FTKTTWSERE LQEDVSCPAS EQKVRLEPSV PDRLCEGRFS  720
SHTSGSNSLS PTYSQSSNSS LGCSSDPKPQ QQHGSAPQLA IKQEISMEEN QSSTLMKAAS  780
HAELQVFTEE RPVTLSRSQS HMFFSEQKPV ENISSMQEDK PDPLKIKAMY GEERCIFRLQ  840
PSWGFEKLRE EIVKRFGISQ ETCDLKYLDD ESEWVLLTCD ADLLECIDVY KSASAKTVRI  900
SVNPTGQPVL GGSFGNSTAL S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G028600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229248.1	0.0	protein NLP1
Refseq	XP_010229249.1	0.0	protein NLP1
Refseq	XP_014752173.1	0.0	protein NLP1
Refseq	XP_014752174.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	I1HA46	0.0	I1HA46_BRADI; Uncharacterized protein
STRING	BRADI1G76340.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Brast02G028600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]