PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G005100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 583aa    MW: 61958.3 Da    PI: 6.3364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G005100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.51.2e-962245812374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         v++L e+A+  ++gd   a+++Larl+++   +g+p++R a+yf+eAL+  l +  ++     ++ ++++ ++  +l a+k+fsevsP+l+
  Brast02G005100.1.p 224 VDQLAEAARLAEAGDGFGAREILARLNHRLPAAGTPLHRSAFYFKEALRVALDEAAPSS----ASAASTPVDVLLKLGAYKAFSEVSPVLQ 310
                         689**************************************************933333....3444455669999*************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f+h+t+ qa+l++++g+ ++H++Dfdi+ G QW++L+q+La+R+  ++ l++T+v+sp+s++  el+ ++e+L++fA+ lgvpf+f+++  
  Brast02G005100.1.p 311 FAHFTCVQAVLDELAGAACIHVLDFDIGVGEQWASLMQELAQRRPAAAALKVTAVVSPASHHPLELQLIHENLSNFAADLGVPFQFTIF-- 399
                         ****************************************************************************************8.. PP

                GRAS 184 krledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
                          +l+++++ eL +v  g+a+aV+l +   +      +     ++vL+lv++l +k+v+ v++ +d+ ++ +F++++++al+ ++ l++sl+
  Brast02G005100.1.p 400 -SLDAVDPTELlAVAGGDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGAKLVISVDRSCDRgGELPFATHLFQALQSCMFLLESLD 481
                         .888998877637777**********888887....4....456**********************8899********************9 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a  +++s+ ++k+Er+l++++i+++v+ ++++  +   ++  Wr ++ +aGF pv++s++a++qa++ll+kv+++g+rve++ gsl+l W+
  Brast02G005100.1.p 482 AM-GTDSDVASKIERFLIQPKIQSCVTRRHRA-AAAGDKMLPWRTMFASAGFVPVQISNFAEAQADSLLKKVPVRGFRVEKRGGSLLLHWQ 570
                         98.99**************************9.78888899************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         + +LvsvSaWr
  Brast02G005100.1.p 571 RAELVSVSAWR 581
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.978197561IPR005202Transcription factor GRAS
PfamPF035144.0E-94224581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MPFADHGNQD QLACCAAATD GLWDPASVLD HRPSPPASAS STLSSSSPLR APAAGVAALA  60
KNVHPPPAQP AAASPWPPPP GEEDAKDDWV HHLPPLDMSM GMGMAWGDPH HAAMPQADHQ  120
HPASQQDSTF LRWIIGGDDA SASAMDHPGL DLDHMLPFPL HPADDAKPFR SPPPALLHHQ  180
QQPHTHAAFH GAASFPSSSL DTQQQQQRAL KPKAETAGDD AAAVDQLAEA ARLAEAGDGF  240
GAREILARLN HRLPAAGTPL HRSAFYFKEA LRVALDEAAP SSASAASTPV DVLLKLGAYK  300
AFSEVSPVLQ FAHFTCVQAV LDELAGAACI HVLDFDIGVG EQWASLMQEL AQRRPAAAAL  360
KVTAVVSPAS HHPLELQLIH ENLSNFAADL GVPFQFTIFS LDAVDPTELL AVAGGDAIAV  420
HLPVGSVHAT AVPSVLHLVR RLGAKLVISV DRSCDRGGEL PFATHLFQAL QSCMFLLESL  480
DAMGTDSDVA SKIERFLIQP KIQSCVTRRH RAAAAGDKML PWRTMFASAG FVPVQISNFA  540
EAQADSLLKK VPVRGFRVEK RGGSLLLHWQ RAELVSVSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-322245815375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G005100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7309010.0EU730901.1 Brachypodium distachyon clone BAC DH037O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312008.10.0scarecrow-like protein 6
TrEMBLI1HAT10.0I1HAT1_BRADI; Uncharacterized protein
STRINGBRADI1G78230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-89GRAS family protein