PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G380000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 726aa MW: 79942.1 Da PI: 6.5647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G380000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.7	2.1e-48	16	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.......kvkaeekew.yfFskrdkkyatgkrknratk 79 lp+GfrFhPtdeel+v+yL+k+++++ + vi+evdiyk++Pw+Lp+ + ++++e+ yfFs+rd+ky++g r+nra+ Brast01G380000.1.p 16 LPAGFRFHPTDEELIVHYLRKRASSSAsassPPWPGVIAEVDIYKLDPWELPSsneqlgnN-GSTNNECmYFFSPRDRKYPNGVRPNRAAG 105 799*****************999885554444559**********9546655432.22334555***************** PP NAM 80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++s+ +g +vg+kk Lvfy+gr pkg kt+W+mheyrl Brast01G380000.1.p 106 SGYWKATGTDKPIVSSssQGVVVGVKKALVFYQGRPPKGIKTNWIMHEYRL 156 **********98777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-54	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	54.687	16	227	IPR003441	NAC domain
Pfam	PF02365	5.2E-25	17	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-54	215	227	IPR003441	NAC domain
SuperFamily	SSF50370	4.34E-22	570	724	IPR000772	Ricin B, lectin domain
Gene3D	G3DSA:2.80.10.50	1.1E-5	576	723	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MTIEVQQQQQ RRGSQLPAGF RFHPTDEELI VHYLRKRASS SASASSPPWP GVIAEVDIYK 60 LDPWELPSSN EQLGNNGSTN NECMYFFSPR DRKYPNGVRP NRAAGSGYWK ATGTDKPIVS 120 SSSQGVVVGV KKALVFYQGR PPKGIKTNWI MHEYRLADAR PHAYRPPPTM RSSSSSSSSS 180 MRLQISTPTV NLLQHACIDT SMLDIFHDFS PACMQLDDWV LCRIYKKPDP QLSQLLLHHD 240 HQLPSSSSMD SQQQQQHQQD HYDSSSSTSR MPMPMPMSMS MPRPPSISDY LEDYSAVSHL 300 FDTLPPPDTG AGFVLSDDEA STTRKRDNSD NGGVVDTMRA SKRSMFGPDQ LTMNSNFSLF 360 GPDQHQLLPA NSSKDRISTS ISIPPRSSKP IMDYPHRHGH GHGRRDDDDD SDDRRGPAPA 420 YGHQDPYDAP PPSYGRAPAD PYDAPPPSYG RAPADPYGHP PAEPYGRAPA DAYGRVDDDG 480 YGRRAPPPSY GHGGGRDDVY GGRAPPPAYG RDDDGGGYGG RAPAPAYGNV VHVSHESGEE 540 DRPHYGGGSG YGHETRPHQG GGGGGGGPPP ARQQTFRIVC KAGEDGFSLA ARDGKVCLVR 600 TDRDDDAQHW IKDMKYSTRV KDEEGYPAIA LVNKATGEAL KHSLGQSHPV RLASYNPEYM 660 DESLLWTESR DVGEGYRCIR MVNNIYLNFD ALHGDKDHGG VRDGTTLVLW EWCEGDNQRW 720 KIVAW*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MTIEVQQQQQ RRGSQLPAGF RFHPTDEELI VHYLRKRASS SASASSPPWP GVIAEVDIYK  60
LDPWELPSSN EQLGNNGSTN NECMYFFSPR DRKYPNGVRP NRAAGSGYWK ATGTDKPIVS  120
SSSQGVVVGV KKALVFYQGR PPKGIKTNWI MHEYRLADAR PHAYRPPPTM RSSSSSSSSS  180
MRLQISTPTV NLLQHACIDT SMLDIFHDFS PACMQLDDWV LCRIYKKPDP QLSQLLLHHD  240
HQLPSSSSMD SQQQQQHQQD HYDSSSSTSR MPMPMPMSMS MPRPPSISDY LEDYSAVSHL  300
FDTLPPPDTG AGFVLSDDEA STTRKRDNSD NGGVVDTMRA SKRSMFGPDQ LTMNSNFSLF  360
GPDQHQLLPA NSSKDRISTS ISIPPRSSKP IMDYPHRHGH GHGRRDDDDD SDDRRGPAPA  420
YGHQDPYDAP PPSYGRAPAD PYDAPPPSYG RAPADPYGHP PAEPYGRAPA DAYGRVDDDG  480
YGRRAPPPSY GHGGGRDDVY GGRAPPPAYG RDDDGGGYGG RAPAPAYGNV VHVSHESGEE  540
DRPHYGGGSG YGHETRPHQG GGGGGGGPPP ARQQTFRIVC KAGEDGFSLA ARDGKVCLVR  600
TDRDDDAQHW IKDMKYSTRV KDEEGYPAIA LVNKATGEAL KHSLGQSHPV RLASYNPEYM  660
DESLLWTESR DVGEGYRCIR MVNNIYLNFD ALHGDKDHGG VRDGTTLVLW EWCEGDNQRW  720
KIVAW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-50	16	227	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-50	16	227	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-50	16	227	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-50	16	227	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-50	16	227	20	168	NAC domain-containing protein 19
3swm_B	9e-50	16	227	20	168	NAC domain-containing protein 19
3swm_C	9e-50	16	227	20	168	NAC domain-containing protein 19
3swm_D	9e-50	16	227	20	168	NAC domain-containing protein 19
3swp_A	9e-50	16	227	20	168	NAC domain-containing protein 19
3swp_B	9e-50	16	227	20	168	NAC domain-containing protein 19
3swp_C	9e-50	16	227	20	168	NAC domain-containing protein 19
3swp_D	9e-50	16	227	20	168	NAC domain-containing protein 19
4dul_A	8e-50	16	227	17	165	NAC domain-containing protein 19
4dul_B	8e-50	16	227	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G380000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092573	1e-172	FP092573.1 Phyllostachys edulis cDNA clone: bphylf053l12, full insert sequence.
GenBank	FP095279	1e-172	FP095279.1 Phyllostachys edulis cDNA clone: bphyem117i20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565352.1	1e-152	NAC transcription factor 29
TrEMBL	I1HC42	1e-151	I1HC42_BRADI; Uncharacterized protein
STRING	BRADI2G03467.1	1e-152	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-54	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Brast01G380000.1.p