PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G366800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 225aa MW: 24324.4 Da PI: 9.0579 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.2e-07 | 51 | 76 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f tG C y + C+FaHg Brast01G366800.1.p 51 YKTKLCDKFETTGLCMYAEGCTFAHG 76 9************************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.1e-06 | 110 | 131 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C++f+ G+C+yG++C F H Brast01G366800.1.p 110 RVCHNFRDRGICHYGEKCVFPH 131 68****************9966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-14 | 46 | 83 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-9 | 49 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0053 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.389 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.76 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.263 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 110 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 110 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDREIRRWDS TPEDVIVLQT GGGPQRPQPS AGIVQPQQCP PDLPPPEKLY YKTKLCDKFE 60 TTGLCMYAEG CTFAHGHADL RRPTHAYAYA DPRRPPPAAA HGAGAAGGGR VCHNFRDRGI 120 CHYGEKCVFP HTSAPAGREI RNPAGEPKRV EGARRSEAPP AARASATAPR YGSAPGRAFP 180 PVPAPAVPRQ MPEQQQQGAP EVSILTLLSQ RKTRGIYGDW PDHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G366800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232991.1 | 1e-97 | zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0Q3MEW2 | 2e-96 | A0A0Q3MEW2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 9e-07 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G366800.1.p |