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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G366700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 209aa MW: 23309.4 Da PI: 8.1301 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.8 | 4.8e-10 | 63 | 88 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lCr f +G C yG+ C+FaHg Brast01G366700.1.p 63 YKTRLCRKFDVSGRCMYGGLCTFAHG 88 9************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 57 | 95 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-9 | 61 | 93 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.835 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-7 | 63 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.54 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-6 | 99 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDRERNPAWE TTPEDIIVVK PGGRPRQLPP SEEIVLVGSP QRQPQPQHLL LDDDQLPPEE 60 RYYKTRLCRK FDVSGRCMYG GLCTFAHGSA ELRAPTLQEA CFHFRSTGAC HYGENCAFSH 120 ASAEPGLAIR NLEEPKLVEA RRSEAPSARN EIPAAPRRAF FLPMPAPAVR ERPRQMSEGQ 180 EGTAGAKISN LERLSRKKTS GIYGDWPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G366700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313999.1 | 2e-42 | zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | A0A0Q3JWX1 | 5e-45 | A0A0Q3JWX1_BRADI; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G366700.1.p |