PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G359800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 266aa    MW: 28301 Da    PI: 10.6349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G359800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31188246159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Brast01G359800.1.p 188 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQDKCRVKKRVERLAEDPRMVITTYEGRHVHS 246
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-33173246IPR003657WRKY domain
SuperFamilySSF1182904.45E-28180247IPR003657WRKY domain
PROSITE profilePS5081129.011183248IPR003657WRKY domain
SMARTSM007749.2E-36188247IPR003657WRKY domain
PfamPF031062.5E-24189245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MFPSPGRAAL GHGSATTAGG GGIRASAAAS ARTTTMAFCS FPPPPSDSPT PAHHLAHHGL  60
LGYSPLVVLD HPTTTTTSSS SSTTIPAATP PALHRLHAPP PAALHPPRTT SPPPHPWSCG  120
EGDRERQRGK GAMTGNSAAA AAGKNDMGVA AVRMKKAGGG AGAKAKGARR KVREPRFCFK  180
TMSDVDVLDD GYKWRKYGQK VVKNTHHPRS YYRCTQDKCR VKKRVERLAE DPRMVITTYE  240
GRHVHSPSRD DDDAARANAE MTFIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25179245874Probable WRKY transcription factor 4
2lex_A4e-25179245874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G359800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087551e-136AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565434.11e-126probable WRKY transcription factor 12
TrEMBLA0A0Q3QNK51e-125A0A0Q3QNK5_BRADI; Uncharacterized protein
STRINGBRADI2G05234.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-46WRKY DNA-binding protein 13