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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G354200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 227aa MW: 23880.2 Da PI: 9.6007 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.2 | 3.2e-37 | 33 | 88 | 4 | 59 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s++tkfCyynny+l+qPr+fCk+CrryWt GGalrnvPvGg++r++ Brast01G354200.1.p 33 ERLACPRCESRDTKFCYYNNYNLQQPRHFCKGCRRYWTVGGALRNVPVGGATRNKA 88 6789*************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.8E-31 | 34 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.82 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-21 | 37 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVLITAMDHR LAEEADGGLA TRTSAAAGRP AAERLACPRC ESRDTKFCYY NNYNLQQPRH 60 FCKGCRRYWT VGGALRNVPV GGATRNKAAL QPSARRKRSS SSSHHGFSAA MASPPVPAPA 120 PARPLSFIQA AATMQSYEVS FVPAGLQVSM SMVDPDRRLL DLGGSFSSLL APPPQPLHFG 180 GFLLGGGGSG SAGLAQAPAA LQQQPAPVSQ ALTEGFWGMD WPDLSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G354200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002537 | 1e-57 | AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06. | |||
GenBank | AP002746 | 1e-57 | AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11. | |||
GenBank | AP014957 | 1e-57 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-57 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753871.1 | 3e-75 | dof zinc finger protein DOF3.1 | ||||
TrEMBL | A0A0Q3QNU6 | 7e-74 | A0A0Q3QNU6_BRADI; Uncharacterized protein | ||||
STRING | OMERI01G06200.1 | 7e-46 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 5e-28 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G354200.1.p |