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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G349800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 27193.9 Da PI: 4.6139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++aa+++ +g Brast01G349800.1.p 72 SSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDAAALCVKG 122 67*****998.**********843...6**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-20 | 72 | 131 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-12 | 72 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-34 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-31 | 73 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 73 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.95E-20 | 74 | 132 | No hit | No description |
PRINTS | PR00367 | 3.4E-9 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAASEQSSDS NSSTTTTTTT TSSSYSASSC SPRSAADADA DAAIGIQNTQ QSGDNNKRKR 60 ARVEASASAS ASSYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFPCPEMAA RAHDAAALCV 120 KGARAVLNFP DLAHALPRPA SLAPRDVQAA AARAALMAHH GRPAAAGHGG AIDDDDDEAP 180 LAGGGLSPEP ETKEGTQPMS EEAAEADQAQ ELVFDELAPL WVEDVVDFAP SDHCWTAAAY 240 DAALGGLDPV GFQPLLWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 66 | 130 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G349800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ353852 | 7e-99 | DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds. | |||
GenBank | GU785008 | 7e-99 | GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds. | |||
GenBank | HG670306 | 7e-99 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233006.1 | 1e-93 | ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | I1HD11 | 3e-92 | I1HD11_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G06180.1 | 5e-93 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 3e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G349800.1.p |