PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G349400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91248.6 Da    PI: 6.2403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G349400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-181573357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++     ++++q+kvWFqNrR +ek+
  Brast01G349400.2.p 15 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECavlaAVDTKQIKVWFQNRRCREKQ 73
                        6789*****************************************************97 PP
2START170.31.3e-531623692204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+
  Brast01G349400.2.p 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVSMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGsnGT 251
                         789*******************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a ++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h dl+ r++
  Brast01G349400.2.p 252 IELLYMQLYAQTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHLDLEPRSV 342
                         ************************************************999999************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         ++++r+l++s+++ ++k+ +a+l++++
  Brast01G349400.2.p 343 PEVVRPLYESSAIVAQKMSMAALRYLR 369
                         ***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1591074IPR001356Homeobox domain
SMARTSM003891.8E-141278IPR001356Homeobox domain
SuperFamilySSF466892.1E-161576IPR009057Homeodomain-like
PfamPF000461.0E-151573IPR001356Homeobox domain
CDDcd000863.51E-141572No hitNo description
Gene3DG3DSA:1.10.10.603.8E-171773IPR009057Homeodomain-like
CDDcd146862.41E-567106No hitNo description
PROSITE profilePS5084827.078152371IPR002913START domain
CDDcd088751.43E-71156372No hitNo description
Gene3DG3DSA:3.30.530.204.0E-21159366IPR023393START-like domain
SuperFamilySSF559611.79E-34161372No hitNo description
SMARTSM002342.3E-43161371IPR002913START domain
PfamPF018522.2E-51162369IPR002913START domain
PfamPF086702.4E-46696839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MVTAREMAAA MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECA VLAAVDTKQI  60
KVWFQNRRCR EKQRRESGRL QSLNRKLTAM NKLLMEENDR LQKQVSSLVY ENGYYRQQHT  120
HSAGLATTDT SCESVVTSGG QQQNVVVAPP PRDASPAGLM SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVSMEPAK VAEILKDRPL WLRDCRSMEV  240
VNVLPAGSNG TIELLYMQLY AQTTLAPARD FWLLRYTSIL DDGSLVVCER SLSSKQGGPS  300
MPLVQPFIRG EMLPSGFLIR PSDGGGSVIH IVDHLDLEPR SVPEVVRPLY ESSAIVAQKM  360
SMAALRYLRQ LAHEDTHSII TGWGRQPAAL RALSQKLTRG FNEALCGLTD DGWSAIESDG  420
VDDVCISVNS SPNKVMSCNA TFGDGLPIVS TGVLCAKASM LLQDVSPPSL LQFLHEHRSQ  480
WADSTLDAFF ASALKPNFCN LPMSRLGGFS GQVILPLAHT FDPEEFLEVI KIGNASNYQD  540
TLMHRDLFLL QMYNGVDENT VGSCSELIFA PIDASFSDDS PLLPSGFRII PIDSPLDTSS  600
PNCTLDLAST LEVGTPRGRM TGSGPVNGAG MKAVMTIAFQ FAFESHLQDS VAAMARQYMR  660
SIISSVQRIA LALSSSRLVS HGSPRLLPPA TPEAATLSRW IVQSYRFHFG AELIKSGDAD  720
GGESVLKSLW HHTSAILCCS LKAMPVLTFA NQSGLDMLET TLAALQDMSL EKILDGHAGK  780
SLIAELPSIM EQGFACVQGG VCASRLGRPA AYEKAVAWKV LDDGGAAHCV CFAFLGWSFV  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G349400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653120.0AK365312.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565084.10.0homeobox-leucine zipper protein HOX29
RefseqXP_024314171.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0Q3IBF50.0A0A0Q3IBF5_BRADI; Uncharacterized protein
STRINGBRADI2G06210.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein