PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G347500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 355aa    MW: 37530.9 Da    PI: 8.4065
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G347500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822208.42e-64171641149
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         g++gr+ptw+ErEnnkrRERrRRaiaaki++GLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkg++p+e+ +a+g+s s sp+
  Brast01G347500.1.p  17 GAGGRMPTWRERENNKRRERRRRAIAAKIFSGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGCRPTERIDAIGCSVSPSPC 107
                         689**************************************************************************************** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlslvsss 149
                         ss+q        +sp++sy+ sp+sssfps +s+ + +++++       + +lp+l++ s+++ s
  Brast01G347500.1.p 108 SSYQ--------PSPRASYHGSPTSSSFPSGASSPFPPHSNNmvngvdaTPILPWLQTFSNSTTS 164
                         ****........66666666666666666666666666655555555559999999998875544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.9E-6319158IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MATGGGGGEG AFGAAGGAGG RMPTWREREN NKRRERRRRA IAAKIFSGLR AHGGYKLPKH  60
CDNNEVLKAL CNEAGWVVEP DGTTYRKGCR PTERIDAIGC SVSPSPCSSY QPSPRASYHG  120
SPTSSSFPSG ASSPFPPHSN NMVNGVDATP ILPWLQTFSN STTSNKRPYL PPLLIHGGSI  180
SAPVTPPLSS PTARTPRMKT DWDESVIQPP WHGSNSPCVV NSTPPSPGRS MIPDPAWLAG  240
IQISSTSPSS PTFSLMSSNP FSVFKEAIPV PGSNSSRMCT PGQSGTCSPV IPGMARHPDV  300
QMMDVVSDEF AFGSSSNDAQ QAPGLVRAWE GERIHEDSGS DELELTLGSS RTRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-242191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-242191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-242191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-242191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G347500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565213.20.0protein BZR1 homolog 2
SwissprotQ0JPT41e-169BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A0Q3IS520.0A0A0Q3IS52_BRADI; Uncharacterized protein
STRINGBRADI2G06400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.14e-80BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]