PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G345300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 345aa    MW: 37607.9 Da    PI: 4.3432
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G345300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.57.7e-21131385128
                 NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +rF+Pt  e v +yL + ++g  l+ +e  i+++d+y   eP+dL +    + kae++ + +fF+  ++++ + +r+ ra+ +g+W a+ +
  Brast01G345300.1.p  13 CRFNPTPLEAVAFYLPRLISGGALHGAERlIHRADVYGErEPRDLAAafapAPKAEQRgDRFFFTLCKRQKGSRTRSARAAGAGTWTAQQT 103
                         79*********************7776655******9654*****8546663333444477**************************9865 PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v ++ g +vg  k L f k r+   ++t Wvm+eyr 
  Brast01G345300.1.p 104 -NDVEDAAGVKVGEVKNLSFKK-RK---KSTGWVMEEYRC 138
                         .899999*************83.33...4699******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1539158IPR003441NAC domain
PfamPF023651.8E-1313137IPR003441NAC domain
SuperFamilySSF1019412.48E-2014157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEGPLDEELF QLCRFNPTPL EAVAFYLPRL ISGGALHGAE RLIHRADVYG EREPRDLAAA  60
FAPAPKAEQR GDRFFFTLCK RQKGSRTRSA RAAGAGTWTA QQTNDVEDAA GVKVGEVKNL  120
SFKKRKKSTG WVMEEYRCLL QGAAVDGGEM VLCRIHLSPN ACAQAREESA AYLRVRQQEW  180
AAEQDQTPMP VGKRPADKDQ NPPCPKRARA SVAPVLTTAA AAGLDGGDTF ASSWVEEMLA  240
GVGAQDEVDT HAAVVEYEDD NTDSFNSPLD ELLRIVATEE QEEGQGETIP AGEAEQHQQV  300
FDLASDDELD FDIPSMEQLR EMMLSLDDAA GSCDFSSWML PGVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G345300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239526.15e-95uncharacterized protein LOC104585198
TrEMBLI1IUI41e-93I1IUI4_BRADI; Uncharacterized protein
STRINGBRADI4G43010.12e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799