PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G324900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 659aa    MW: 72443.9 Da    PI: 6.3968
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G324900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.4e-29592643152
              RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  Brast01G324900.2.p 592 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 643
                         589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.63582658IPR003035RWP-RK domain
PfamPF020422.1E-26595643IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MDIDPSSASH ADGGAGDLWP FDSLTTSLFF SSVSSSPPLS TLPVASSSWL APPSPLWLFD  60
DRQLLPIEVG PAPVSAAAEN AAVAAAAAAA AEDVQRARSG NSDTASKRVE RLSNNKWQFH  120
LSLHDDSTNS SCLFKEKLTH ALRYFKESTD QHLLVQVWAP VKSGDRYVLT TSGQPFVLDH  180
QSIGLLQYRA VSMMYMFSID GDNAGELGLP GRVYKQKVPE WTPNVQYYSS TEYPRLNHAI  240
SYNVHGTVAL PVFDPSVQSC IAVVELIMTS KKINYADEVD KVCKALEAVN LKSTEILDHP  300
NVQICNEGRQ SALVEILEIL TVVCEEHKLP LAQTWVPCKY RSVLAHGGGV KKSCLSFDGS  360
CMGEVCMSTS DVAFHVIDAH MWGFRDACVE HHLQKGQGVS GKAFIYHRPC FSKDISQFCK  420
VEYPLVHYAR MFGLAGCFAV CLQSPYTGDD YYILEFFLPP SCRDEDDQNA LLESILGLIN  480
QCLRNLKVAG NGASNEASLQ LSNVLIVENE DFKTNGHFEN SEGCFRESPE DDTNGVHEFD  540
KGNNKVSEGH LLADDNSQNN GTSVSRPNGS GASDSSLLHK SNKQPERRRG KAEKTISLEV  600
LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVLFLLFLL VLHQILSI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G324900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565547.10.0protein NLP3
SwissprotQ5NB820.0NLP3_ORYSJ; Protein NLP3
TrEMBLA0A0Q3JYC70.0A0A0Q3JYC7_BRADI; Uncharacterized protein
STRINGBRADI2G08177.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein