PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G310300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 435aa MW: 45637.9 Da PI: 7.6101

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G310300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.5e-11	64	89	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ Brast01G310300.1.p 64 DEADCIYYLRTGACGFGDRCRYNHPR 89 6799********************96 PP
2	zf-CCCH	39.8	7.3e-13	114	138	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ Brast01G310300.1.p 114 QPVCEYYMKTGTCKFGSNCKYHHPK 138 789********************96 PP
3	zf-CCCH	40	6.6e-13	158	183	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ Brast01G310300.1.p 158 GEKECSYYMKTGQCKFGSTCKFHHPE 183 7899********************96 PP
4	zf-CCCH	38.6	1.8e-12	310	336	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ Brast01G310300.1.p 310 PGQPECQYYMRTGDCKFGATCKYHHPR 336 5789*********************96 PP
5	zf-CCCH	34.1	4.5e-11	359	382	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ Brast01G310300.1.p 359 QPCSYYAQNGYCRYGVACKYDHPM 382 69********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.5E-5	62	89	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.277	62	90	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-9	64	89	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-6	65	90	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	68	89	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-7	111	138	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.042	111	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-7	113	140	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-10	114	138	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-6	116	140	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.812	156	184	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-6	156	183	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-10	158	183	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-6	159	183	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	162	182	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.319	309	337	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-6	309	336	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-10	311	336	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	313	337	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.7E-4	315	336	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.371	355	383	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-7	355	382	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	357	383	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-8	359	382	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.1E-5	359	380	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MEPHAAAAAA GGGGGGGGGG EGEGGRGADP DTGLEGPMWG LGLGGDGGGG GGEGDGARLP 60 ERPDEADCIY YLRTGACGFG DRCRYNHPRD RGGTEFGGGA KNAVALDYPE RLGQPVCEYY 120 MKTGTCKFGS NCKYHHPKQD GSVLPVMLNN SGFPLRPGEK ECSYYMKTGQ CKFGSTCKFH 180 HPEFGGFPVT PGIYPPLQSS VPSPHPYASL ANWQMGRPPV VPGSYMPGSY APMMLSSGMI 240 PLQGWSPYPA AVNPVASGGP QQTVQAGPVY GIGHHGSSST IAYGGPYMPY SSSTIQSSHS 300 QQEHGFPERP GQPECQYYMR TGDCKFGATC KYHHPRDWSS PKSNYVFSPF CLPLRPGAQP 360 CSYYAQNGYC RYGVACKYDH PMAKDPSVNQ VGSQVAASEP VGSMLPKGVF QPDTMMRAQT 420 TTTAGGSSSP GAGR*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MEPHAAAAAA GGGGGGGGGG EGEGGRGADP DTGLEGPMWG LGLGGDGGGG GGEGDGARLP  60
ERPDEADCIY YLRTGACGFG DRCRYNHPRD RGGTEFGGGA KNAVALDYPE RLGQPVCEYY  120
MKTGTCKFGS NCKYHHPKQD GSVLPVMLNN SGFPLRPGEK ECSYYMKTGQ CKFGSTCKFH  180
HPEFGGFPVT PGIYPPLQSS VPSPHPYASL ANWQMGRPPV VPGSYMPGSY APMMLSSGMI  240
PLQGWSPYPA AVNPVASGGP QQTVQAGPVY GIGHHGSSST IAYGGPYMPY SSSTIQSSHS  300
QQEHGFPERP GQPECQYYMR TGDCKFGATC KYHHPRDWSS PKSNYVFSPF CLPLRPGAQP  360
CSYYAQNGYC RYGVACKYDH PMAKDPSVNQ VGSQVAASEP VGSMLPKGVF QPDTMMRAQT  420
TTTAGGSSSP GAGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G310300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371626	0.0	AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566542.2	0.0	uncharacterized protein LOC100827764
Swissprot	Q5NAW2	0.0	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A0Q3MGX2	0.0	A0A0Q3MGX2_BRADI; Uncharacterized protein
STRING	BRADI2G09350.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-115	C3H family protein

Link Out ? help Back to Top
Phytozome	Brast01G310300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]