PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G308900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 1404aa    MW: 155645 Da    PI: 6.0902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G308900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-184293156
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr ++ +g+W+AeIrd      k++r++lg+++t+eeAa+a++ a  +++g+
  Brast01G308900.1.p 42 PRYRGVRKRP-SGKWAAEIRDvH----KKARVWLGTYDTPEEAARAYDCACYAMRGH 93
                        68********.7*********55....25*********************9999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.53E-2942101No hitNo description
PfamPF008472.0E-144293IPR001471AP2/ERF domain
PROSITE profilePS5103222.23443100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2943101IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2143102IPR016177DNA-binding domain
SMARTSM003805.9E-3343106IPR001471AP2/ERF domain
PRINTSPR003671.9E-84455IPR001471AP2/ERF domain
PRINTSPR003671.9E-86682IPR001471AP2/ERF domain
CDDcd147981.12E-8490595No hitNo description
SuperFamilySSF525408.63E-49632903IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.1E-50653929IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.3E-14656815IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003648.3E-8666681No hitNo description
PRINTSPR003648.3E-8738752No hitNo description
PRINTSPR003648.3E-8836850No hitNo description
SuperFamilySSF520586.8E-169681331IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-610331127IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.5E-612331278IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1404 aa     Download sequence    Send to blast
MFRPVHRSDT TDSSSGEESP AARFSAPAKE KQVAVAGRPQ EPRYRGVRKR PSGKWAAEIR  60
DVHKKARVWL GTYDTPEEAA RAYDCACYAM RGHMARLNFP DEITAEGRPR KLPNELIRGK  120
LSWLESLGIC DDEAITAALK DEGRSGKLKL PNEIATQWSS SDGGSDTETL DFADESTKLP  180
LPSQGQGSAA ADFDLNRKLL LDGFEFDFSA ESSGISAFGS NSHHGKKAEA TLSSIGSAQG  240
SDFLEEITET SLAPSCEVSL SEASLVSIQP VRNPEGMAVM IEKNSSSSVY PPIQNPDRIG  300
FRAGWPRRRP TRRTSSEVTL SSELSAQGSN YFEETTEMSG LSPVGSLRLN FSEEITTTWA  360
PSSEVTLSPN WLTDCLAPLD IPVPSDECLN FRTELALSSH EGGGSRSDAL QAAGTMDIPP  420
QGTASIIQNN ATEDCPQLPL QQGGEEEEHH QPQLYPGLAS PHQTSSQYCA ALGAMGSLLL  480
KLHTTLHGSS SLPKMVKESM QLLKDDLEEV AAYLEDLSEV EDSPLTAKCW MKEVRELTYD  540
VEDYMDKSVL QPAIVRATAK SASAKIKNGG RPVAKARHVK ITRLPKRVNR QHKIADMLSE  600
FRVFVRETIE RHERYDLDCR SSRRRFVSVG PVLPMPYDEA ADIVIDGRMS EFISSLANDG  660
DQQLKVASLV GSECLGKTTL ARVFYKKFGG PYDCRAFVRV SQKPDMKRVF RDILWQVQRQ  720
QPPEDCKQHE LTDSIRKHLQ DKRYLLVIDD LCDASVWDII TDACPKGNNQ HSRIITTTRN  780
EDVALSCCCY LSESVFEMKP LDDYHSRKLF FDRVFGSESD CPQQFKEVSN EIVGICAGLP  840
LAIISIASLL ASQTVILMDL LMHIRDSLTT CLWENSTSEG MRQVLNLSYN NLPRYLKTCL  900
LYFSMYPVGR TFCKDDLVKQ WVAEGFINAA EGKDMEKVAA SYFDELVQRR FLQPLCMNHN  960
NEVLSCTVHD MIHDLIAHKS AEENFIVVTD YHRKNMALSD NVHRLSLHFG DAKYARIPAN  1020
MGTSQVRSVT CSGLFKCMPS FAELTLVRVL NIELSGHHGD DRLDLTGISE LFQLRYLKVA  1080
SACDVCIELP NHMKGLQCLE TLDMNAKVSA VPLDIIHLPR LLHLHLPVET SVQSDWIGST  1140
GSVSPGSTGK LINLRDIRLT CSVPPSDHLQ RNMEALCSLL GGHENLKTLA MVPIATRRND  1200
FVRAGSASEV TTVSWDGLRP PLHLQRFEWL PCSCILSRVP KWIGELGSLC ILKIAIETLS  1260
MDDVANLQGL PALTVVSLYV RARVAERIIF GKAGFSALKY FKFRCSVPWL KFEADAMPNL  1320
QILKLGFNAP TVNQQDAARI SIERLSGINE ISVKIGGAGA DSESTLMDTV SNHPSNPITK  1380
VQLVDWVFYG EYDSDKGRDE CHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C6e-38497110328616Disease resistance RPP13-like protein 4
6j5t_F6e-38497110328616Disease resistance RPP13-like protein 4
6j5t_G6e-38497110328616Disease resistance RPP13-like protein 4
6j5t_L6e-38497110328616Disease resistance RPP13-like protein 4
6j5t_O6e-38497110328616Disease resistance RPP13-like protein 4
6j5u_A6e-38497110328616Disease resistance RPP13-like protein 4
6j5v_A6e-38497110328616Disease resistance RPP13-like protein 4
6j5w_A6e-38497110328616Disease resistance RPP13-like protein 4
6j6i_C6e-38497110328616Disease resistance RPP13-like protein 4
6j6i_F6e-38497110328616Disease resistance RPP13-like protein 4
6j6i_G6e-38497110328616Disease resistance RPP13-like protein 4
6j6i_L6e-38497110328616Disease resistance RPP13-like protein 4
6j6i_O6e-38497110328616Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G308900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565612.30.0putative disease resistance RPP13-like protein 2
TrEMBLA0A0Q3FZB70.0A0A0Q3FZB7_BRADI; Uncharacterized protein
STRINGBRADI2G09434.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-23ERF family protein