PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G307800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 493aa MW: 54707 Da PI: 5.4651

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G307800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.8	6.1e-51	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGf FhP+d elv++yLk+k+ g+++e ++i+evdiyk+ePwdLp+ +v +++++w+fF+ rd+ky++g r+nrat +gyWk+tgkd Brast01G307800.1.p 9 LPPGFGFHPKDTELVSHYLKRKILGQRIEY-DIIPEVDIYKHEPWDLPAkcNVPTQDNKWHFFAARDRKYPNGARSNRATVAGYWKSTGKD 98 79**************************.99***********5346667999***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ ++++vg+kktLvf++gr p+g++t+W+mhey + Brast01G307800.1.p 99 RAIKV-DKRTVGTKKTLVFHEGRPPTGRRTEWIMHEYYI 136 *.999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-59	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	55.3	9	159	IPR003441	NAC domain
Pfam	PF02365	9.0E-25	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
METLRNMTLP PGFGFHPKDT ELVSHYLKRK ILGQRIEYDI IPEVDIYKHE PWDLPAKCNV 60 PTQDNKWHFF AARDRKYPNG ARSNRATVAG YWKSTGKDRA IKVDKRTVGT KKTLVFHEGR 120 PPTGRRTEWI MHEYYIDENE CHACPDMKDA FVLCKVTKRV DWTSENGNEV GNSDPHPQQS 180 NVAATSAVSI EQPDAAAESV IGAELPNDVA TSAITAQTTT ADGDDEIQGW LEGMIDFSSV 240 DPVSAGLSLE EQNAESSNRG AMAPKVEPDY ASPNQFVVDD DSDYLLPDDI YNMLCPGSDD 300 FTPWHTEQAA LAFADQTYSI MGVDTFTLPS SFAEGTQNEE LQLPLEINEP NLSNEATDNG 360 VIVRTRQVKT PADNIPPYRT NRTRLQHSIN RMVTSSSESI NETIKFVDNG GRLDLMTNVE 420 HKKKHARDVT TIRQRDAGKS NRNQSNQGFF RGLRKSVWGC SAAGLNILVA ICMVGVAVAI 480 LHHGCHRTGI SL*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

METLRNMTLP PGFGFHPKDT ELVSHYLKRK ILGQRIEYDI IPEVDIYKHE PWDLPAKCNV  60
PTQDNKWHFF AARDRKYPNG ARSNRATVAG YWKSTGKDRA IKVDKRTVGT KKTLVFHEGR  120
PPTGRRTEWI MHEYYIDENE CHACPDMKDA FVLCKVTKRV DWTSENGNEV GNSDPHPQQS  180
NVAATSAVSI EQPDAAAESV IGAELPNDVA TSAITAQTTT ADGDDEIQGW LEGMIDFSSV  240
DPVSAGLSLE EQNAESSNRG AMAPKVEPDY ASPNQFVVDD DSDYLLPDDI YNMLCPGSDD  300
FTPWHTEQAA LAFADQTYSI MGVDTFTLPS SFAEGTQNEE LQLPLEINEP NLSNEATDNG  360
VIVRTRQVKT PADNIPPYRT NRTRLQHSIN RMVTSSSESI NETIKFVDNG GRLDLMTNVE  420
HKKKHARDVT TIRQRDAGKS NRNQSNQGFF RGLRKSVWGC SAAGLNILVA ICMVGVAVAI  480
LHHGCHRTGI SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-44	7	162	13	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G307800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU001723	0.0	GU001723.1 Triticum aestivum cultivar Suwon11 NAC-domain transcription factor (NAC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566632.1	0.0	NAC domain-containing protein 74
Swissprot	Q7GCL7	0.0	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	I1HE56	0.0	I1HE56_BRADI; Uncharacterized protein
STRING	BRADI2G09530.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	1e-65	NAC domain containing protein 86

Link Out ? help Back to Top
Phytozome	Brast01G307800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]