PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G289500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 558aa    MW: 59563.8 Da    PI: 6.8389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G289500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.8e-16359405455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Brast01G289500.1.p 359 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 405
                         5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.11E-17352409No hitNo description
SuperFamilySSF474591.83E-20353414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-20359413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-13359405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSDGNEFAEL LWENGQAVVH GRRKHPQPSF QPFGTGSSGI QEKHPGGGGD NMMAFTKAAG  60
VFGGMGMAPS LHDLASGLQH GSHENGDDDA VPWIHYPIME EDNNNAPALT TADYSSDFFS  120
ELQEAAANVG SLPPSNHNTT NNRGTPVAGS SRAASKEIQG LSSALTTRTA EPQAELASAA  180
KQARPTDSVM NFSLFSRPAA LARATLQSAH RPQGTDKVPN AAANNRMEST VIQTASGPRT  240
GPVFADQRAA WPQQKEVRFA PAPALSASVG NLQQEMARDK LSNNRVVHKD AARKAPDATV  300
TTSSVCSGNG IVNDEPWHQQ KRKIQAECSA SQDEDLDDES GALLRSTNRS MKRSRTAEVH  360
NLSERRRRDR INEKMRALQE LIPNCNKIDK ASMLDEAIEY LKTLQLQVQM MSMGTGLCIP  420
PMLLPPAMQH LQLSPMAHFP HLSMGLGYGM GVFDMNNAGT IPVSPMPGAH FPYQMIPGAA  480
AQGLAIPGAN AMQMFGIPGQ AIPSSGSSVP PFTSLAGLLV RQNLAPEVSG AMPSMVQEQQ  540
QGTANQQQQS LNKEAKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363368ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G289500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233063.20.0transcription factor APG
RefseqXP_024314974.10.0transcription factor APG
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLI1HEP10.0I1HEP1_BRADI; Uncharacterized protein
STRINGBRADI2G11100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-48phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]