PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast01G288800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

M-type_MADS

Protein Properties

Length: 241aa MW: 26948.1 Da PI: 8.3419

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G288800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.1	5.4e-19	5	46	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 kri n+ r++tf +Rrng+ KKA+EL +LC+++++vi++++ Brast01G288800.1.p 5 KRIPNDVARHTTFRNRRNGLVKKASELATLCNVNACVIVYGE 46 79**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.7E-17	1	56	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.25	1	46	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.27E-22	2	78	No hit	No description
SuperFamily	SSF55455	6.93E-20	5	90	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-17	6	46	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MARKKRIPND VARHTTFRNR RNGLVKKASE LATLCNVNAC VIVYGEGEAQ PEVWPSVAQA 60 VPILHRYKAM PDIAQCKKTV TQEGLLRQRM DKLREQIQKA RRENHERHTA SLVHKVMLGR 120 LPRLEGLTVE EVTNVGWMVQ MNLKSLVDCI VFLQALADLE ARTNPAPSLM YEQQAPHQET 180 LLDMTLEARW WRWRRLVVEA PELQAETELE EMQTPVLVEA LDAGGVTGAS IVGGVAGGSS 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G288800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230798.3	1e-107	agamous-like MADS-box protein AGL80
TrEMBL	A0A0Q3G064	1e-106	A0A0Q3G064_BRADI; Uncharacterized protein
STRING	GRMZM5G839969_P01	9e-59	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-24	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Brast01G288800.1.p