PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G184100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 260aa    MW: 29317.4 Da    PI: 8.5881
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G184100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.61.6e-2162138371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +++Lr +++    ++ek+e+ g++t+neva+e +se           ++kn rRR+YD++NVL al +i+k ek+ei+w+g
  Brast01G184100.1.p  62 GWGLREYSKI---VCEKVEAkGRTTYNEVADEVYSElksmahigqgfEEKNVRRRVYDAFNVLIALCVIAK-EKKEIKWMG 138
                         689*******...*******9**************************999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3356143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-2060138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-1663139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.1E-1764138IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011382.2E-14145253IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.62E-27145249No hitNo description
PfamPF087814.6E-19146246IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAPPRGDTAT AASASLDLTG VHILEASMPP PPPECGGNAA ERKEEGDKNR KKEKAETQRI  60
TGWGLREYSK IVCEKVEAKG RTTYNEVADE VYSELKSMAH IGQGFEEKNV RRRVYDAFNV  120
LIALCVIAKE KKEIKWMGIS NYRYETIKKL EEVCKELNNR TKNKKKLLKE IEKQFDDLQN  180
IKLRNQTLRS SAENANGIQL PFLLVKTSRK ASVEIEISED SKFARFEVTG APFTLHDDLS  240
ILEEIRHNNI GRADLGTLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2542139189PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G184100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754350.11e-176transcription factor-like protein DPB isoform X1
TrEMBLA0A0Q3MY081e-175A0A0Q3MY08_BRADI; Uncharacterized protein
STRINGBRADI2G46527.11e-130(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-47Transcription factor DP