PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G120700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 700aa    MW: 76370.1 Da    PI: 7.3289
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G120700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.8e-1757112156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         ++k +++t++q ++Le +F  + +p+ ++r++L+ ++gL+ +qVk+WFqN+R++ek
  Brast01G120700.1.p  57 KKKLRRLTAQQSQILEGFFSICVHPDDSQRRHLSGSTGLSMQQVKFWFQNKRTQEK 112
                         5677899**********************************************998 PP
2START93.83.5e-302144303205
                         HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         ae a +e+ +++  + p+W  +     e++n+  + q+ + ++       ++ea ra++vv m++ +lve l+d+  ++   ++    +a+
  Brast01G120700.1.p 214 AENARREFGSLINTNGPLWLPVHggslEILNEGAYAQECDITNIanligVRTEATRAEAVVLMDPINLVEYLMDSE-CYGSFCPgilsSAK 303
                         677888999999999******999999************999889***99**************************.99999999999*** PP

                         EEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
               START  81 tlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         t++v +         ga +lm++e++++splvp R+ +f+Ry+++l +g  vivdvS+d    +     + ++ + pSgili+p   + +k
  Brast01G120700.1.p 304 TIKVYNWPtipgsydGAMHLMTTETVFPSPLVPsRKCTFLRYCKELLGGAMVIVDVSLDDGGGN-----LFKCCKMPSGILIQPITPNSCK 389
                         ****98767777999********************************************99987.....589999**************** PP

                         EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         vt +ehv + +   h+l+++ + +gl++ga++wv t+ +q +
  Brast01G120700.1.p 390 VTAIEHVRVADTGLHELYKPCL-TGLMFGARRWVVTMAQQSA 430
                         ********************98.699**********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-1641114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1744112IPR009057Homeodomain-like
PROSITE profilePS5007114.98154114IPR001356Homeobox domain
PfamPF000461.2E-1457112IPR001356Homeobox domain
SMARTSM003892.3E-1557118IPR001356Homeobox domain
CDDcd000864.85E-1364115No hitNo description
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PROSITE profilePS5084822.937203434IPR002913START domain
SuperFamilySSF559611.79E-18206401No hitNo description
CDDcd088752.01E-70208430No hitNo description
SMARTSM002343.0E-14212431IPR002913START domain
PfamPF018521.4E-22214429IPR002913START domain
SuperFamilySSF559615.91E-6467596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKRVSSSEQQ ALGNHSEEVH EVNNDEEDSG ILPSNGNVRC GGPSADQDDV PERPRRKKKL  60
RRLTAQQSQI LEGFFSICVH PDDSQRRHLS GSTGLSMQQV KFWFQNKRTQ EKLKQGKELN  120
YRLIVDNNDL KTENKMLKEA HINAVCPNCV GSPSRHQIDA EMERLRETNV SLKQQLSRLY  180
AGIQPSSSSS FQFGISAENA IATQNETQMI AALAENARRE FGSLINTNGP LWLPVHGGSL  240
EILNEGAYAQ ECDITNIANL IGVRTEATRA EAVVLMDPIN LVEYLMDSEC YGSFCPGILS  300
SAKTIKVYNW PTIPGSYDGA MHLMTTETVF PSPLVPSRKC TFLRYCKELL GGAMVIVDVS  360
LDDGGGNLFK CCKMPSGILI QPITPNSCKV TAIEHVRVAD TGLHELYKPC LTGLMFGARR  420
WVVTMAQQSA RMRTFFHVHD SYLRSNVRSK GNKTLTRLAD SLLVSYSRSI ANLPEGAWTT  480
LCGSGTDQDI KVAHKMNDDG SNTSVVCVSA SFHLPIPLRV TFDLLRNNVL RAKWDVLASG  540
GAVKEEVTVC NGLGPADGVY ILHVKPATGN GGKTMILQNS WYDVSGSFIV YAPVDTMLVN  600
RIMGSEDLPE LSLFPTGLSL LPVGGTAMQG QAALGEDGAT LVTVGFQILV TPAQTNVHSR  660
TVQTAIALMA DNIATIKRTL INSYPIFYRS SGSAAPILN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256RPRRK
25260RPRRKKKLR
35359PRRKKKL
45459RRKKKL
55460RRKKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G120700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314625.10.0homeobox-leucine zipper protein TF1
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLA0A2K2DFH10.0A0A2K2DFH1_BRADI; Uncharacterized protein
STRINGBRADI2G52160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-111protodermal factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]