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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G118200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19270 Da PI: 10.7749 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+ Brast01G118200.1.p 26 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 76 7********.**********883....5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.94E-31 | 25 | 85 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 26 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-34 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDPMVRGVAS LGGGGGAMRG EGEEAHYRGV RKRPWGRYAA EIRDPWKKTR VWLGTFDTPV 60 EAALAYDRAA RTLRGAKAKT NFPDHHQLLH VPHRRLLAPL QQRHHNPAVP FGGIDLNFPS 120 PWHFVYFSPL AAAPLPQAAS TPAVSAPPST TLQLGMGSRP GSLPFDLNEP PSLLFGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 26 | 83 | 5 | 63 | ATERF1 |
3gcc_A | 4e-21 | 26 | 83 | 5 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G118200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094650 | 4e-87 | FP094650.1 Phyllostachys edulis cDNA clone: bphylf047i23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567200.2 | 9e-92 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0Q3GGF1 | 2e-90 | A0A0Q3GGF1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G52380.1 | 1e-88 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-33 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G118200.1.p |