PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G111300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 179aa MW: 20246.7 Da PI: 8.9249 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.4 | 1.9e-29 | 30 | 163 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek...ewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 pG+rF P+d+el+v+yL++k+++++l++ ++++ +d+y +P+dL + k +e+ +wy F +r++ky++gkr++r t +g+Wkatgk+ Brast01G111300.1.p 30 PGVRFVPSDDELIVHYLHRKLQDRPLPI-DIVHVADVYAEHPKDLSVTSKLGESlegSWYVFPERNRKYPKGKRPSRNTGtAGRWKATGKE 119 9***************************.889999**********8543433334469*******************66549********* PP NAM 90 kevlsk....kgelvglkktLvfy.........kgrapkgektdWvmheyr 127 +e+l++ + +v + +++ ++kt+W m e+ Brast01G111300.1.p 120 EEILATrvlaY-------EEFVHDgldtsgsksRYSKRPTKKTEWKMSEFV 163 ****9544330.......33333333333333233455557********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.597 | 28 | 179 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-30 | 29 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-15 | 30 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSEPTSSTPQ QQTREAAAPA PYNVDCLRIP GVRFVPSDDE LIVHYLHRKL QDRPLPIDIV 60 HVADVYAEHP KDLSVTSKLG ESLEGSWYVF PERNRKYPKG KRPSRNTGTA GRWKATGKEE 120 EILATRVLAY EEFVHDGLDT SGSKSRYSKR PTKKTEWKMS EFVSTNSDRP IGSEANTML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-18 | 30 | 122 | 17 | 105 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G111300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639570.1 | 7e-37 | protein ATAF2 | ||||
TrEMBL | A0A077RW96 | 1e-42 | A0A077RW96_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q2T5 | 1e-42 | A0A446Q2T5_TRITD; Uncharacterized protein | ||||
STRING | EMT14569 | 2e-41 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16068 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 4e-26 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G111300.1.p |