PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G110600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 342aa MW: 37420 Da PI: 9.1728

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G110600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.3	9.3e-15	268	311	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Brast01G110600.1.p 268 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLKKQ 311 69***************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-12	264	322	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.7E-15	266	311	No hit	No description
PROSITE profile	PS50217	11.702	266	311	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.94E-12	268	311	No hit	No description
CDD	cd14707	2.03E-25	268	312	No hit	No description
Pfam	PF00170	4.4E-12	268	310	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	271	286	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGSRKMASQP GRGGGDAGTS QRGQMQNLAR QGSLYSLTLD EVQNHLGEPL QSMNLDELLR 60 TVFPDETDPN GATTSKYEPS AGLLRQGSIT MPSELSKKTV DEVWKGIQDA PKKNVQEGGR 120 RRRERQTTLG EMTLEDFLVK AGVVAEGYLK DLNDVGDGSF VGRGATAAGA TELTSGAQWL 180 DPYQQQIAVS AIESHQHMQQ IMPGAYMHSQ LQLVPQPLNA VPVAPVILDS AYSDSHNTSP 240 MVSPTSDSQT PGRKRGIPGD VPNKFVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR 300 LEEENERLKK QKYPAVPEPS DLYLGGGRHP HFPLSIVCSK S*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGSRKMASQP GRGGGDAGTS QRGQMQNLAR QGSLYSLTLD EVQNHLGEPL QSMNLDELLR  60
TVFPDETDPN GATTSKYEPS AGLLRQGSIT MPSELSKKTV DEVWKGIQDA PKKNVQEGGR  120
RRRERQTTLG EMTLEDFLVK AGVVAEGYLK DLNDVGDGSF VGRGATAAGA TELTSGAQWL  180
DPYQQQIAVS AIESHQHMQQ IMPGAYMHSQ LQLVPQPLNA VPVAPVILDS AYSDSHNTSP  240
MVSPTSDSQT PGRKRGIPGD VPNKFVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR  300
LEEENERLKK QKYPAVPEPS DLYLGGGRHP HFPLSIVCSK S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	125	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G110600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014754826.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_014754827.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	3e-69	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0Q3KGN7	0.0	A0A0Q3KGN7_BRADI; Uncharacterized protein
STRING	BRADI2G53060.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-67	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Brast01G110600.1.p

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]