PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G099600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 24174.9 Da PI: 6.6742 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6e-10 | 67 | 107 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L Brast01G099600.1.p 67 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 107 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.313 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 63 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-13 | 64 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-13 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.86E-14 | 64 | 111 | No hit | No description |
Pfam | PF00010 | 2.7E-7 | 67 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDPYHHYGNT HDPRGGAGGF PIHPQPQPPY FLHNHPVAEI RPMRVSGGGG RRRPGTKLST 60 DPQSVAARER RHRISDRFRV LRSLVPGGSK MDTVSMLEQA IHYVKFLKAQ VTLHQAALVQ 120 HEQQQGGGAD DDEALTAMQL LGVHSHAHAH AQEAMDCYHA AIGAHHQLVE ELDLGPAGQM 180 SSSAHDLPPL PSCIFDEESS AAACYSVCTL QGEDVTHDHG SY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G099600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY886011 | 1e-105 | AY886011.1 Oryza sativa (japonica cultivar-group) isolate LAX10 LAX gene, partial cds. | |||
GenBank | AY886012 | 1e-105 | AY886012.1 Oryza sativa (japonica cultivar-group) isolate LAX11 LAX gene, partial cds. | |||
GenBank | AY886013 | 1e-105 | AY886013.1 Oryza sativa (japonica cultivar-group) isolate LAX12 LAX gene, partial cds. | |||
GenBank | AY886014 | 1e-105 | AY886014.1 Oryza sativa (japonica cultivar-group) isolate LAX13 LAX gene, partial cds. | |||
GenBank | AY886015 | 1e-105 | AY886015.1 Oryza sativa (japonica cultivar-group) isolate LAX14 LAX gene, partial cds. | |||
GenBank | AY886016 | 1e-105 | AY886016.1 Oryza sativa (indica cultivar-group) isolate LAX15 LAX gene, partial cds. | |||
GenBank | AY886017 | 1e-105 | AY886017.1 Oryza sativa (indica cultivar-group) isolate LAX16 LAX gene, partial cds. | |||
GenBank | AY886018 | 1e-105 | AY886018.1 Oryza sativa (indica cultivar-group) isolate LAX18 LAX gene, partial cds. | |||
GenBank | AY886019 | 1e-105 | AY886019.1 Oryza sativa (indica cultivar-group) isolate LAX19 LAX gene, partial cds. | |||
GenBank | AY886020 | 1e-105 | AY886020.1 Oryza sativa (indica cultivar-group) isolate LAX20 LAX gene, partial cds. | |||
GenBank | AY886021 | 1e-105 | AY886021.1 Oryza sativa (indica cultivar-group) isolate LAX21 LAX gene, partial cds. | |||
GenBank | AY886022 | 1e-105 | AY886022.1 Oryza sativa (indica cultivar-group) isolate LAX22 LAX gene, partial cds. | |||
GenBank | AY886023 | 1e-105 | AY886023.1 Oryza sativa (indica cultivar-group) isolate LAX23 LAX gene, partial cds. | |||
GenBank | AY886024 | 1e-105 | AY886024.1 Oryza sativa (indica cultivar-group) isolate LAX24 LAX gene, partial cds. | |||
GenBank | AY886025 | 1e-105 | AY886025.1 Oryza rufipogon isolate LAX26 LAX gene, partial cds. | |||
GenBank | AY886026 | 1e-105 | AY886026.1 Oryza rufipogon isolate LAX27 LAX gene, partial cds. | |||
GenBank | AY886027 | 1e-105 | AY886027.1 Oryza rufipogon isolate LAX28 LAX gene, partial cds. | |||
GenBank | AY886030 | 1e-105 | AY886030.1 Oryza rufipogon isolate LAX32 LAX gene, partial cds. | |||
GenBank | CP012609 | 1e-105 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | JN210896 | 1e-105 | JN210896.1 Oryza sativa Japonica Group cultivar YUM111 LAX protein (lax) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567247.1 | 1e-135 | transcription factor LAX PANICLE 1 | ||||
Swissprot | Q7XAQ6 | 3e-58 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
TrEMBL | I1HT21 | 1e-134 | I1HT21_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54030.1 | 1e-135 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 3e-26 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Brast01G099600.1.p |