PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G097500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 370aa    MW: 41844.8 Da    PI: 5.0048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G097500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0693116226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k  lC ff + G+C+ G +CkF+H+
  Brast01G097500.1.p  93 KSILCEFFKA-GQCQKGFKCKFSHD 116
                         6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.27291118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-691116IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-591117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-493117IPR000571Zinc finger, CCCH-type
SMARTSM003566.3162199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.944162200IPR000571Zinc finger, CCCH-type
PfamPF165434.2E-16219298IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPPKKAPAAS KADVAKKQKV LEDKTFGLKN KNKSKNVQKY VQSLQQSGQP KPDPTKTAAK  60
KKKEEEKARE KELSDLFKVA VSQPKVPVGV DPKSILCEFF KAGQCQKGFK CKFSHDLNVQ  120
RKGEKIDIYS DKRDGEDTMD DWDQETLEKV IASKGAEYQQ NKPTDIVCKH FLDAVEKKQY  180
GWFWVCPNGG KDCHYRHALP PGYVLKSQMK ALLEEERQKV AIEDEIEDQR KKVQTTTPMT  240
TELFMEWKRK KAEEKEAGLA ALRADRAKND RMSGRELFMA DASVFVDDAE AYEVYERREE  300
SQASQEQGKK TQDEGPSSST SNGKEAEEDP DDEDIDDDDD LDMDELNELE ASLSRTSIQI  360
REPGEGTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229250RKKVQTTTPMTTELFMEWKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G097500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507660.0AK250766.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232524.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLI1HT480.0I1HT48_BRADI; Uncharacterized protein
STRINGBRADI2G54220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]